Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CMV05_RS00305 Genome accession   NZ_CP023310
Coordinates   60858..61967 (+) Length   369 a.a.
NCBI ID   WP_096035867.1    Uniprot ID   -
Organism   Vibrio anguillarum strain VIB12 isolate Sea bass     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 55858..66967
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CMV05_RS00285 (CMV05_00285) rsmB 56774..58054 (-) 1281 WP_096035864.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CMV05_RS00290 (CMV05_00290) fmt 58114..59061 (-) 948 WP_096035865.1 methionyl-tRNA formyltransferase -
  CMV05_RS00295 (CMV05_00295) def 59078..59587 (-) 510 WP_038148727.1 peptide deformylase -
  CMV05_RS00300 (CMV05_00300) - 59728..60858 (+) 1131 WP_096035866.1 LysM peptidoglycan-binding domain-containing protein -
  CMV05_RS00305 (CMV05_00305) dprA 60858..61967 (+) 1110 WP_096035867.1 DNA-processing protein DprA Machinery gene
  CMV05_RS00310 (CMV05_00310) - 61970..62446 (+) 477 WP_064624061.1 DUF494 family protein -
  CMV05_RS00315 (CMV05_00315) - 62474..63046 (+) 573 WP_172858978.1 type I DNA topoisomerase -
  CMV05_RS00320 (CMV05_00320) - 63119..64258 (-) 1140 WP_096035869.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CMV05_RS00325 (CMV05_00325) purE 64263..64748 (-) 486 WP_010319910.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CMV05_RS00330 (CMV05_00330) - 64949..65506 (+) 558 WP_096035870.1 L-threonylcarbamoyladenylate synthase -
  CMV05_RS00335 (CMV05_00335) hemF 65527..66441 (+) 915 WP_010319908.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39891.69 Da        Isoelectric Point: 6.7183

>NTDB_id=245848 CMV05_RS00305 WP_096035867.1 60858..61967(+) (dprA) [Vibrio anguillarum strain VIB12 isolate Sea bass]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQEQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIATAPPVLFVKGRITVLSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSVQSDQQLPFAELLA
NVGVEATPVDILASRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=245848 CMV05_RS00305 WP_096035867.1 60858..61967(+) (dprA) [Vibrio anguillarum strain VIB12 isolate Sea bass]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGTCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCCGCGTTGGGTCTAGTTCAAGAGCAAATCC
GTTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCATATCCTT
ACTCCATTTTGCGATGGTTATCCTTCTTTACTAAAAGAAATTGCTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGTACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTCACCAGTGGTTTGGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGGCCAGATAACTTTCCGC
GGCGAAATCGCATTATCAGCGGGTTAGCGGTTGGTGTTTTAGTGGTGGAAGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCGCGCTATGCGGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCCATTGCTAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATCGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCTGATTTATTTTCTGTACAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCCATATACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAACTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAGGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(316-362)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.208

99.187

0.637
  dprA Vibrio cholerae strain A1552

61.456

100

0.618
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.526

98.374

0.428
  dprA Neisseria meningitidis MC58

37.975

100

0.407
  dprA Neisseria meningitidis strain C311

37.975

100

0.407
  dprA Neisseria gonorrhoeae MS11

36.387

100

0.388
  dprA Acinetobacter baumannii D1279779

40.227

95.664

0.385
  dprA Neisseria gonorrhoeae strain FA1090

36.132

100

0.385
  dprA Acinetobacter baumannii strain A118

39.66

95.664

0.379
  dprA Acinetobacter baylyi ADP1

41.742

90.244

0.377
  dprA Haemophilus influenzae Rd KW20

50

74.255

0.371

Multiple sequence alignment