Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CLD04_RS18895 Genome accession   NZ_CP023257
Coordinates   3583831..3584172 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain TLO3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3578831..3589172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CLD04_RS18875 (CLD04_18875) hepAB 3579074..3581842 (+) 2769 WP_014481139.1 DEAD/DEAH box helicase -
  CLD04_RS18885 (CLD04_18885) ywpJ 3581968..3582825 (-) 858 WP_095844003.1 phosphatase YwpJ -
  CLD04_RS18890 (CLD04_18890) glcR 3582831..3583607 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  CLD04_RS18895 (CLD04_18895) ssbB 3583831..3584172 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  CLD04_RS18900 (CLD04_18900) ywpG 3584249..3584632 (-) 384 WP_015714843.1 DynA interaction protein YwpG -
  CLD04_RS18905 (CLD04_18905) ywpF 3584807..3585217 (+) 411 WP_014481144.1 YwpF-like family protein -
  CLD04_RS18910 (CLD04_18910) - 3585352..3585744 (-) 393 Protein_3683 class A sortase -
  CLD04_RS22345 - 3585731..3586096 (-) 366 WP_250614796.1 SpaA isopeptide-forming pilin-related protein -
  CLD04_RS18915 (CLD04_18915) ywpD 3586004..3586840 (+) 837 WP_014481147.1 histidine kinase -
  CLD04_RS18920 (CLD04_18920) mscL 3586888..3587283 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  CLD04_RS18925 (CLD04_18925) fabZ 3587356..3587781 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CLD04_RS18930 (CLD04_18930) rapD 3587973..3589037 (+) 1065 WP_029318731.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=245578 CLD04_RS18895 WP_003227798.1 3583831..3584172(-) (ssbB) [Bacillus subtilis strain TLO3]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=245578 CLD04_RS18895 WP_003227798.1 3583831..3584172(-) (ssbB) [Bacillus subtilis strain TLO3]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment