Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CK945_RS20925 Genome accession   NZ_CP023168
Coordinates   4033273..4033620 (-) Length   115 a.a.
NCBI ID   WP_020453204.1    Uniprot ID   A0AAW6K4M3
Organism   Bacillus paralicheniformis strain 14DA11     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4028273..4038620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK945_RS20895 srlD 4028887..4029672 (-) 786 WP_020453198.1 sorbitol-6-phosphate dehydrogenase -
  CK945_RS20900 - 4029687..4030058 (-) 372 WP_020453199.1 PTS glucitol/sorbitol transporter subunit IIA -
  CK945_RS20905 - 4030082..4031089 (-) 1008 WP_020453200.1 PTS glucitol/sorbitol transporter subunit IIB -
  CK945_RS20910 - 4031106..4031654 (-) 549 WP_020453201.1 PTS glucitol/sorbitol transporter subunit IIC -
  CK945_RS20915 - 4031651..4032094 (-) 444 WP_020453202.1 transcriptional regulator GutM -
  CK945_RS20920 - 4032091..4033053 (-) 963 WP_020453203.1 sugar-binding transcriptional regulator -
  CK945_RS20925 ssbB 4033273..4033620 (-) 348 WP_020453204.1 single-stranded DNA-binding protein Machinery gene
  CK945_RS20930 - 4033725..4034096 (-) 372 WP_023857133.1 hypothetical protein -
  CK945_RS20935 - 4034278..4034691 (+) 414 WP_020453206.1 YwpF-like family protein -
  CK945_RS20940 mscL 4034731..4035111 (-) 381 WP_023857132.1 large conductance mechanosensitive channel protein MscL -
  CK945_RS20945 fabZ 4035183..4035617 (-) 435 WP_003185902.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CK945_RS20950 - 4035799..4036626 (-) 828 WP_023857130.1 flagellar hook-basal body protein -
  CK945_RS20955 - 4036670..4037509 (-) 840 WP_095291470.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12795.52 Da        Isoelectric Point: 6.9543

>NTDB_id=245140 CK945_RS20925 WP_020453204.1 4033273..4033620(-) (ssbB) [Bacillus paralicheniformis strain 14DA11]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERVFITEVVARSVRFLGESRKAHEPSEA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=245140 CK945_RS20925 WP_020453204.1 4033273..4033620(-) (ssbB) [Bacillus paralicheniformis strain 14DA11]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACAAAAGATCCCGAACTTCGGTACACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGACTTTGTCAATTGCACCCTGT
GGCGCAAAACTGCCGTGAATACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACTCGC
CAATACGTCAATTCAGAAGGCGAACGCGTCTTTATTACAGAAGTTGTCGCCCGATCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCCCATGAGCCGTCGGAAGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

72.816

89.565

0.652
  ssbA Bacillus subtilis subsp. subtilis str. 168

60.194

89.565

0.539
  ssb Latilactobacillus sakei subsp. sakei 23K

52.252

96.522

0.504
  ssbA Streptococcus mutans UA159

45.794

93.043

0.426
  ssbB Lactococcus lactis subsp. cremoris KW2

44.34

92.174

0.409
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.925

93.043

0.409
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae Rx1

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae D39

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae R6

42.056

93.043

0.391
  ssbB/cilA Streptococcus mitis SK321

42.056

93.043

0.391

Multiple sequence alignment