Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CJZ70_RS01765 Genome accession   NZ_CP022890
Coordinates   343469..343810 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain DKU_NT_02     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 338469..348810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJZ70_RS01730 (CJZ70_01730) fabZ 338479..338904 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CJZ70_RS01735 (CJZ70_01735) mscL 338977..339372 (+) 396 WP_072592613.1 large conductance mechanosensitive channel protein MscL -
  CJZ70_RS01740 (CJZ70_01740) ywpD 339420..340256 (-) 837 WP_014481147.1 histidine kinase -
  CJZ70_RS21305 - 340185..340529 (+) 345 WP_103330051.1 prealbumin-like fold domain-containing protein -
  CJZ70_RS01745 (CJZ70_01745) - 340516..340908 (+) 393 Protein_351 class A sortase -
  CJZ70_RS01750 (CJZ70_01750) - 341053..342300 (+) 1248 WP_031600262.1 IS256-like element ISBsu2 family transposase -
  CJZ70_RS01755 (CJZ70_01755) ywpF 342425..342835 (-) 411 WP_003227794.1 YwpF-like family protein -
  CJZ70_RS01760 (CJZ70_01760) ywpG 343010..343392 (+) 383 Protein_354 DynA interaction protein YwpG -
  CJZ70_RS01765 (CJZ70_01765) ssbB 343469..343810 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  CJZ70_RS01770 (CJZ70_01770) glcR 344034..344810 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  CJZ70_RS01775 (CJZ70_01775) ywpJ 344816..345673 (+) 858 WP_014481140.1 phosphatase YwpJ -
  CJZ70_RS01785 (CJZ70_01785) hepAB 345799..348567 (-) 2769 WP_014481139.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=242523 CJZ70_RS01765 WP_003227798.1 343469..343810(+) (ssbB) [Bacillus subtilis strain DKU_NT_02]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=242523 CJZ70_RS01765 WP_003227798.1 343469..343810(+) (ssbB) [Bacillus subtilis strain DKU_NT_02]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment