Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CCZ37_RS00180 Genome accession   NZ_CP022741
Coordinates   38245..39354 (+) Length   369 a.a.
NCBI ID   WP_094499476.1    Uniprot ID   A0A223MU99
Organism   Vibrio qinghaiensis strain Q67     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33245..44354
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ37_RS00160 (CCZ37_00160) rsmB 34158..35438 (-) 1281 WP_094499473.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CCZ37_RS00165 (CCZ37_00165) fmt 35498..36445 (-) 948 WP_017043682.1 methionyl-tRNA formyltransferase -
  CCZ37_RS00170 (CCZ37_00170) def 36462..36971 (-) 510 WP_208613919.1 peptide deformylase -
  CCZ37_RS00175 (CCZ37_00175) - 37112..38245 (+) 1134 WP_094499475.1 LysM peptidoglycan-binding domain-containing protein -
  CCZ37_RS00180 (CCZ37_00180) dprA 38245..39354 (+) 1110 WP_094499476.1 DNA-processing protein DprA Machinery gene
  CCZ37_RS00185 (CCZ37_00185) - 39357..39833 (+) 477 WP_019283082.1 DUF494 family protein -
  CCZ37_RS00190 (CCZ37_00190) - 39861..40433 (+) 573 WP_010319912.1 type I DNA topoisomerase -
  CCZ37_RS00195 (CCZ37_00195) - 40506..41645 (-) 1140 WP_010319911.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CCZ37_RS00200 (CCZ37_00200) purE 41650..42135 (-) 486 WP_010319910.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CCZ37_RS00205 (CCZ37_00205) - 42336..42893 (+) 558 WP_010319909.1 L-threonylcarbamoyladenylate synthase -
  CCZ37_RS00210 (CCZ37_00210) hemF 42914..43828 (+) 915 WP_010319908.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39801.47 Da        Isoelectric Point: 6.4991

>NTDB_id=242041 CCZ37_RS00180 WP_094499476.1 38245..39354(+) (dprA) [Vibrio qinghaiensis strain Q67]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQEQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIATAPPVLFVKGRITALSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSAQSDQQLPFAELLA
NVGVEATPVDILASRTDTPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=242041 CCZ37_RS00180 WP_094499476.1 38245..39354(+) (dprA) [Vibrio qinghaiensis strain Q67]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGCCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCTGCGCTGGGTCTAGTTCAAGAGCAAATCC
GCTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCACATCCTT
ACTCCATTTTGCGATGGTTACCCTTCTTTACTAAAAGAAATTGCTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGCACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTCACCAGTGGTTTGGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGGCCAGATAACTTTCCGC
GGCGCAATCGCATTATCAGCGGGTTAGCGGTTGGTGTTTTAGTGGTGGAAGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCTCGCTATGCGGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCAATTGCCAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATCGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCTGATTTATTTTCAGCTCAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCGATACACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAGCTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAAGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(312-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223MU99

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.208

99.187

0.637
  dprA Vibrio cholerae strain A1552

61.456

100

0.618
  dprA Glaesserella parasuis strain SC1401

45.6

100

0.463
  dprA Legionella pneumophila strain ERS1305867

43.802

98.374

0.431
  dprA Neisseria meningitidis strain C311

37.722

100

0.404
  dprA Neisseria meningitidis MC58

37.722

100

0.404
  dprA Acinetobacter baumannii D1279779

40.227

95.664

0.385
  dprA Neisseria gonorrhoeae MS11

36.132

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.878

100

0.382
  dprA Acinetobacter baumannii strain A118

39.66

95.664

0.379
  dprA Haemophilus influenzae Rd KW20

50.365

74.255

0.374
  dprA Acinetobacter baylyi ADP1

40.181

89.702

0.36

Multiple sequence alignment