Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYA   Type   Machinery gene
Locus tag   CHF41_RS02715 Genome accession   NZ_CP022680
Coordinates   535227..536177 (+) Length   316 a.a.
NCBI ID   WP_119875877.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 530227..541177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS02705 rpoC 531014..534649 (+) 3636 WP_119875875.1 DNA-directed RNA polymerase subunit beta' -
  CHF41_RS02710 - 534766..535119 (+) 354 WP_119875876.1 DUF1033 family protein -
  CHF41_RS02715 comYA 535227..536177 (+) 951 WP_119875877.1 competence type IV pilus ATPase ComGA Machinery gene
  CHF41_RS02720 comYB 536089..537126 (+) 1038 WP_119875878.1 competence type IV pilus assembly protein ComGB Machinery gene
  CHF41_RS02725 comGC/cglC 537128..537442 (+) 315 WP_075105262.1 competence type IV pilus major pilin ComGC Machinery gene
  CHF41_RS02730 comGD 537402..537830 (+) 429 WP_119875879.1 competence type IV pilus minor pilin ComGD -
  CHF41_RS02735 comYE 537802..538095 (+) 294 WP_119875880.1 competence type IV pilus minor pilin ComGE Machinery gene
  CHF41_RS02740 comYF 538082..538516 (+) 435 WP_119875881.1 competence type IV pilus minor pilin ComGF Machinery gene
  CHF41_RS02745 comGG 538524..538922 (+) 399 WP_162911910.1 competence type IV pilus minor pilin ComGG -
  CHF41_RS02750 comYH 538945..539898 (+) 954 WP_119875883.1 class I SAM-dependent methyltransferase Machinery gene
  CHF41_RS02755 - 539948..541138 (+) 1191 WP_119875884.1 acetate kinase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 35385.56 Da        Isoelectric Point: 6.5912

>NTDB_id=241554 CHF41_RS02715 WP_119875877.1 535227..536177(+) (comYA) [Streptococcus respiraculi strain HTS25]
MVQKIAQAMIREAVEKRVSDLYLLPKEVTCQVYERILDARKLVSELEEATYSAVISHFKFLAGMSVGEKRRSQQGACDYD
YGAGTIALRFSAVGDYRGKESLVIRFLYDQEEHLHFWFDALRHVEEAIRGRGLYLFSGPVGSGKTTLMYHLAGLKFADRQ
IVTIEDPVEIKRDEMLQLQLNEAIGLTYDNLIKLSLRHRPDLLIIGEIRDTETARAVIRASLTGVTIFSTVHGKSVPGVY
ARMLELGVSPDELHHALQGIMYQRLIGGGGIVDVATQAYQTYSPARWNEQIDQLFAAGYISARQAEAEKIVLGSST

Nucleotide


Download         Length: 951 bp        

>NTDB_id=241554 CHF41_RS02715 WP_119875877.1 535227..536177(+) (comYA) [Streptococcus respiraculi strain HTS25]
ATGGTTCAAAAAATAGCACAAGCAATGATTAGAGAAGCAGTAGAAAAGCGAGTCAGCGACCTTTATTTACTACCCAAAGA
AGTCACTTGTCAAGTCTATGAGCGTATCTTGGATGCTAGGAAGCTAGTCAGCGAGCTGGAAGAGGCGACCTATTCGGCAG
TGATTAGTCATTTTAAGTTTCTTGCTGGCATGAGTGTCGGCGAAAAACGGCGTAGCCAGCAAGGCGCTTGTGACTATGAT
TACGGAGCAGGAACGATAGCGCTCAGGTTTTCAGCAGTTGGGGACTACCGAGGAAAAGAAAGTCTGGTGATTCGTTTTTT
ATATGATCAAGAAGAGCATCTCCATTTCTGGTTTGATGCCTTGAGGCATGTAGAGGAAGCGATTAGGGGACGAGGTTTGT
ATTTGTTTTCGGGTCCGGTTGGGTCTGGCAAGACCACCCTGATGTATCATTTGGCAGGGCTGAAATTTGCCGACCGGCAG
ATTGTCACTATTGAAGATCCGGTAGAAATTAAGCGAGATGAAATGCTACAATTACAGCTCAATGAAGCCATTGGTTTGAC
CTATGACAATCTAATCAAGCTGTCTTTACGGCATCGGCCAGACTTGCTGATTATTGGAGAAATCAGGGATACAGAAACAG
CGCGGGCGGTCATTCGCGCTAGCTTGACAGGGGTAACGATTTTTTCAACTGTCCATGGCAAGAGTGTTCCAGGTGTTTAT
GCCCGCATGTTGGAGCTGGGAGTGAGTCCTGATGAATTGCATCATGCCTTGCAGGGTATTATGTATCAACGTTTAATCGG
AGGAGGAGGAATTGTAGATGTGGCAACGCAAGCTTACCAAACCTATTCGCCAGCGCGGTGGAATGAACAGATTGACCAGC
TTTTTGCGGCAGGATATATCAGCGCTCGTCAAGCAGAGGCCGAAAAAATTGTCCTTGGTTCGTCAACGTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(8-266)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYA Streptococcus gordonii str. Challis substr. CH1

64.516

98.101

0.633
  comGA/cglA/cilD Streptococcus pneumoniae D39

62.903

98.101

0.617
  comGA/cglA Streptococcus sobrinus strain NIDR 6715-7

62.903

98.101

0.617
  comGA/cglA/cilD Streptococcus pneumoniae Rx1

62.903

98.101

0.617
  comGA/cglA/cilD Streptococcus pneumoniae R6

62.903

98.101

0.617
  comGA/cglA/cilD Streptococcus pneumoniae TIGR4

62.903

98.101

0.617
  comGA/cglA/cilD Streptococcus mitis NCTC 12261

62.581

98.101

0.614
  comYA Streptococcus mutans UA140

61.736

98.418

0.608
  comYA Streptococcus mutans UA159

61.736

98.418

0.608
  comGA Lactococcus lactis subsp. cremoris KW2

52.05

100

0.522

Multiple sequence alignment