Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   CHF41_RS02740 Genome accession   NZ_CP022680
Coordinates   538082..538516 (+) Length   144 a.a.
NCBI ID   WP_119875881.1    Uniprot ID   -
Organism   Streptococcus respiraculi strain HTS25     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 533082..543516
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHF41_RS02710 - 534766..535119 (+) 354 WP_119875876.1 DUF1033 family protein -
  CHF41_RS02715 comYA 535227..536177 (+) 951 WP_119875877.1 competence type IV pilus ATPase ComGA Machinery gene
  CHF41_RS02720 comYB 536089..537126 (+) 1038 WP_119875878.1 competence type IV pilus assembly protein ComGB Machinery gene
  CHF41_RS02725 comGC/cglC 537128..537442 (+) 315 WP_075105262.1 competence type IV pilus major pilin ComGC Machinery gene
  CHF41_RS02730 comGD 537402..537830 (+) 429 WP_119875879.1 competence type IV pilus minor pilin ComGD -
  CHF41_RS02735 comYE 537802..538095 (+) 294 WP_119875880.1 competence type IV pilus minor pilin ComGE Machinery gene
  CHF41_RS02740 comYF 538082..538516 (+) 435 WP_119875881.1 competence type IV pilus minor pilin ComGF Machinery gene
  CHF41_RS02745 comGG 538524..538922 (+) 399 WP_162911910.1 competence type IV pilus minor pilin ComGG -
  CHF41_RS02750 comYH 538945..539898 (+) 954 WP_119875883.1 class I SAM-dependent methyltransferase Machinery gene
  CHF41_RS02755 - 539948..541138 (+) 1191 WP_119875884.1 acetate kinase -
  CHF41_RS02760 - 541578..542141 (+) 564 WP_119875885.1 folate family ECF transporter S component -
  CHF41_RS02765 pepA 542195..543268 (-) 1074 WP_119875886.1 glutamyl aminopeptidase -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 16548.98 Da        Isoelectric Point: 6.7224

>NTDB_id=241558 CHF41_RS02740 WP_119875881.1 538082..538516(+) (comYF) [Streptococcus respiraculi strain HTS25]
MKKSKAAAFTLLECLLALLIISGSLLVFDGLAKLVHHEVTYQDTSLEKKWLVFADQLRYELADVRLVKVENDHLYVEKSG
QQLSFGKSKADDFRKTSDKGQGYQPMLYQVASATVYQDKSLVQIDITFENGWERSFVYRFEEKV

Nucleotide


Download         Length: 435 bp        

>NTDB_id=241558 CHF41_RS02740 WP_119875881.1 538082..538516(+) (comYF) [Streptococcus respiraculi strain HTS25]
TTGAAAAAGAGTAAGGCGGCGGCTTTTACGCTTTTGGAGTGTCTTCTAGCCTTGTTAATTATCTCAGGCAGTCTGCTCGT
ATTTGATGGCTTGGCTAAGCTCGTTCATCATGAAGTCACTTATCAGGATACCAGCTTGGAAAAGAAGTGGCTGGTCTTTG
CGGACCAACTGCGATATGAATTGGCCGACGTGCGTCTAGTTAAAGTAGAAAATGACCATCTATATGTCGAAAAATCTGGT
CAACAACTGTCTTTTGGTAAATCAAAGGCAGATGATTTTCGTAAGACGAGTGACAAGGGTCAAGGCTATCAGCCTATGTT
ATATCAGGTTGCGTCTGCTACAGTCTACCAAGATAAAAGCCTTGTTCAGATTGATATTACCTTTGAAAATGGTTGGGAGA
GAAGTTTTGTCTATCGTTTTGAAGAAAAAGTGTAG

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(40-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

50.35

99.306

0.5
  comYF Streptococcus mutans UA159

49.65

99.306

0.493
  comGF/cglF Streptococcus pneumoniae R6

47.887

98.611

0.472
  comGF/cglF Streptococcus pneumoniae TIGR4

47.887

98.611

0.472
  comGF/cglF Streptococcus pneumoniae Rx1

47.887

98.611

0.472
  comGF/cglF Streptococcus pneumoniae D39

47.887

98.611

0.472
  comGF/cglF Streptococcus mitis SK321

47.518

97.917

0.465
  comGF/cglF Streptococcus mitis NCTC 12261

47.518

97.917

0.465
  comGF Lactococcus lactis subsp. cremoris KW2

47.143

97.222

0.458

Multiple sequence alignment