Detailed information
Bioinformatically predicted
Overview
| Name | comYB | Type | Machinery gene |
| Locus tag | CHF41_RS02720 | Genome accession | NZ_CP022680 |
| Coordinates | 536089..537126 (+) | Length | 345 a.a. |
| NCBI ID | WP_119875878.1 | Uniprot ID | - |
| Organism | Streptococcus respiraculi strain HTS25 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 531089..542126
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CHF41_RS02710 | - | 534766..535119 (+) | 354 | WP_119875876.1 | DUF1033 family protein | - |
| CHF41_RS02715 | comYA | 535227..536177 (+) | 951 | WP_119875877.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| CHF41_RS02720 | comYB | 536089..537126 (+) | 1038 | WP_119875878.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| CHF41_RS02725 | comGC/cglC | 537128..537442 (+) | 315 | WP_075105262.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| CHF41_RS02730 | comGD | 537402..537830 (+) | 429 | WP_119875879.1 | competence type IV pilus minor pilin ComGD | - |
| CHF41_RS02735 | comYE | 537802..538095 (+) | 294 | WP_119875880.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| CHF41_RS02740 | comYF | 538082..538516 (+) | 435 | WP_119875881.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| CHF41_RS02745 | comGG | 538524..538922 (+) | 399 | WP_162911910.1 | competence type IV pilus minor pilin ComGG | - |
| CHF41_RS02750 | comYH | 538945..539898 (+) | 954 | WP_119875883.1 | class I SAM-dependent methyltransferase | Machinery gene |
| CHF41_RS02755 | - | 539948..541138 (+) | 1191 | WP_119875884.1 | acetate kinase | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 39333.88 Da Isoelectric Point: 9.0800
>NTDB_id=241555 CHF41_RS02720 WP_119875878.1 536089..537126(+) (comYB) [Streptococcus respiraculi strain HTS25]
MNRLTSFLRQDISALVKQRPKKLSLVRQRKMIELFTNLLTSGFHLVEIVDFLKKSQLLADCYTNLLYQGLLAGKPFAVLL
SDLQFSDAVVTQVALAEVHGNLELSLTHIQDYLGNLVKVRKKLVEVATYPVILLLFLLVIMLGLKSYLLPQLEEGSGART
IINLLPLVFLVSAVIGLALVVLLSYCYRRSEKIKTVSLLAGLPFAGRLLQLYLTAYYAREWGNLIGQGLEMTQIVELMQH
QQSDLFRRIGRELGLALERGVAFEEHIKHYPFFKKELSLMIEYGQVKDKLGHELRLYANECWEEFFAKLNTAMQLIQPMV
FLFVAVIVVLIYVAMLLPIYQNLEV
MNRLTSFLRQDISALVKQRPKKLSLVRQRKMIELFTNLLTSGFHLVEIVDFLKKSQLLADCYTNLLYQGLLAGKPFAVLL
SDLQFSDAVVTQVALAEVHGNLELSLTHIQDYLGNLVKVRKKLVEVATYPVILLLFLLVIMLGLKSYLLPQLEEGSGART
IINLLPLVFLVSAVIGLALVVLLSYCYRRSEKIKTVSLLAGLPFAGRLLQLYLTAYYAREWGNLIGQGLEMTQIVELMQH
QQSDLFRRIGRELGLALERGVAFEEHIKHYPFFKKELSLMIEYGQVKDKLGHELRLYANECWEEFFAKLNTAMQLIQPMV
FLFVAVIVVLIYVAMLLPIYQNLEV
Nucleotide
Download Length: 1038 bp
>NTDB_id=241555 CHF41_RS02720 WP_119875878.1 536089..537126(+) (comYB) [Streptococcus respiraculi strain HTS25]
ATGAACAGATTGACCAGCTTTTTGCGGCAGGATATATCAGCGCTCGTCAAGCAGAGGCCGAAAAAATTGTCCTTGGTTCG
TCAACGTAAAATGATTGAATTGTTTACTAATCTGCTGACAAGTGGCTTTCATCTAGTAGAAATTGTTGACTTTCTAAAAA
AGAGCCAATTGTTGGCAGATTGTTATACTAATCTTTTATATCAGGGTTTGTTGGCTGGGAAACCTTTTGCGGTTCTTCTT
TCAGATTTACAATTTTCAGATGCGGTCGTAACTCAGGTCGCCTTGGCAGAAGTGCATGGTAATCTGGAGCTGAGTTTAAC
TCATATTCAAGATTATTTGGGAAATCTTGTAAAAGTGCGGAAGAAGCTGGTTGAGGTAGCAACTTATCCAGTTATCTTGC
TACTATTTTTGCTTGTAATCATGCTAGGCCTAAAAAGTTATCTTTTGCCCCAATTAGAAGAGGGAAGTGGTGCAAGAACA
ATAATTAATTTACTTCCGCTTGTCTTTTTAGTGTCGGCTGTTATTGGCCTTGCTTTAGTAGTTCTTTTGAGCTATTGTTA
TCGGAGGTCTGAGAAGATAAAGACGGTCAGTTTGTTGGCGGGTTTGCCCTTTGCAGGGAGATTGCTTCAGTTGTATTTAA
CTGCTTATTATGCGCGTGAATGGGGCAATCTCATCGGTCAAGGTCTTGAAATGACTCAGATTGTTGAATTGATGCAACAT
CAGCAGTCAGATTTATTTCGTAGAATCGGAAGGGAGTTGGGTCTGGCTTTAGAGAGGGGTGTTGCCTTTGAAGAACATAT
CAAACACTATCCTTTTTTCAAGAAGGAGTTGAGTCTCATGATTGAATACGGTCAAGTAAAAGACAAGCTGGGACATGAAC
TACGGTTGTATGCGAACGAGTGTTGGGAGGAATTTTTTGCCAAGTTAAATACTGCCATGCAGTTAATTCAACCTATGGTA
TTTCTGTTTGTAGCTGTCATCGTCGTCTTAATTTATGTAGCGATGCTATTGCCAATTTATCAAAATTTGGAGGTTTAA
ATGAACAGATTGACCAGCTTTTTGCGGCAGGATATATCAGCGCTCGTCAAGCAGAGGCCGAAAAAATTGTCCTTGGTTCG
TCAACGTAAAATGATTGAATTGTTTACTAATCTGCTGACAAGTGGCTTTCATCTAGTAGAAATTGTTGACTTTCTAAAAA
AGAGCCAATTGTTGGCAGATTGTTATACTAATCTTTTATATCAGGGTTTGTTGGCTGGGAAACCTTTTGCGGTTCTTCTT
TCAGATTTACAATTTTCAGATGCGGTCGTAACTCAGGTCGCCTTGGCAGAAGTGCATGGTAATCTGGAGCTGAGTTTAAC
TCATATTCAAGATTATTTGGGAAATCTTGTAAAAGTGCGGAAGAAGCTGGTTGAGGTAGCAACTTATCCAGTTATCTTGC
TACTATTTTTGCTTGTAATCATGCTAGGCCTAAAAAGTTATCTTTTGCCCCAATTAGAAGAGGGAAGTGGTGCAAGAACA
ATAATTAATTTACTTCCGCTTGTCTTTTTAGTGTCGGCTGTTATTGGCCTTGCTTTAGTAGTTCTTTTGAGCTATTGTTA
TCGGAGGTCTGAGAAGATAAAGACGGTCAGTTTGTTGGCGGGTTTGCCCTTTGCAGGGAGATTGCTTCAGTTGTATTTAA
CTGCTTATTATGCGCGTGAATGGGGCAATCTCATCGGTCAAGGTCTTGAAATGACTCAGATTGTTGAATTGATGCAACAT
CAGCAGTCAGATTTATTTCGTAGAATCGGAAGGGAGTTGGGTCTGGCTTTAGAGAGGGGTGTTGCCTTTGAAGAACATAT
CAAACACTATCCTTTTTTCAAGAAGGAGTTGAGTCTCATGATTGAATACGGTCAAGTAAAAGACAAGCTGGGACATGAAC
TACGGTTGTATGCGAACGAGTGTTGGGAGGAATTTTTTGCCAAGTTAAATACTGCCATGCAGTTAATTCAACCTATGGTA
TTTCTGTTTGTAGCTGTCATCGTCGTCTTAATTTATGTAGCGATGCTATTGCCAATTTATCAAAATTTGGAGGTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comYB | Streptococcus mutans UA159 |
58.235 |
98.551 |
0.574 |
| comYB | Streptococcus mutans UA140 |
57.941 |
98.551 |
0.571 |
| comYB | Streptococcus gordonii str. Challis substr. CH1 |
55.556 |
99.13 |
0.551 |
| comGB/cglB | Streptococcus mitis NCTC 12261 |
54.599 |
97.681 |
0.533 |
| comGB/cglB | Streptococcus pneumoniae TIGR4 |
54.03 |
97.101 |
0.525 |
| comGB/cglB | Streptococcus pneumoniae Rx1 |
54.03 |
97.101 |
0.525 |
| comGB/cglB | Streptococcus mitis SK321 |
54.03 |
97.101 |
0.525 |
| comGB/cglB | Streptococcus pneumoniae D39 |
54.03 |
97.101 |
0.525 |
| comGB/cglB | Streptococcus pneumoniae R6 |
54.03 |
97.101 |
0.525 |
| comGB | Lactococcus lactis subsp. cremoris KW2 |
48.368 |
97.681 |
0.472 |