Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | BaGK_RS18970 | Genome accession | NZ_CP022653 |
| Coordinates | 3833949..3834290 (-) | Length | 113 a.a. |
| NCBI ID | WP_094232888.1 | Uniprot ID | - |
| Organism | Bacillus atrophaeus strain GQJK17 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3828949..3839290
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BaGK_RS18955 (BaGK_18955) | - | 3829186..3831960 (+) | 2775 | WP_094232886.1 | DEAD/DEAH box helicase | - |
| BaGK_RS18960 (BaGK_18960) | - | 3832083..3832940 (-) | 858 | WP_094232887.1 | Cof-type HAD-IIB family hydrolase | - |
| BaGK_RS18965 (BaGK_18965) | - | 3832946..3833722 (-) | 777 | WP_061570962.1 | DeoR/GlpR family DNA-binding transcription regulator | - |
| BaGK_RS18970 (BaGK_18970) | ssbB | 3833949..3834290 (-) | 342 | WP_094232888.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| BaGK_RS18975 (BaGK_18975) | - | 3834368..3834751 (-) | 384 | WP_088118124.1 | hypothetical protein | - |
| BaGK_RS18980 (BaGK_18980) | - | 3834926..3835336 (+) | 411 | WP_061570879.1 | YwpF-like family protein | - |
| BaGK_RS18985 (BaGK_18985) | - | 3835610..3836269 (-) | 660 | WP_094232889.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12516.17 Da Isoelectric Point: 7.8150
>NTDB_id=241271 BaGK_RS18970 WP_094232888.1 3833949..3834290(-) (ssbB) [Bacillus atrophaeus strain GQJK17]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRNTAENTALYCQKGSLVGISGRIQTR
SYENAEGVKVYVTEVMADTVRFMDSKAREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRNTAENTALYCQKGSLVGISGRIQTR
SYENAEGVKVYVTEVMADTVRFMDSKAREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=241271 BaGK_RS18970 WP_094232888.1 3833949..3834290(-) (ssbB) [Bacillus atrophaeus strain GQJK17]
TTGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACAATCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCAGATTACGTCAATTGCACGCTTT
GGAGAAACACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCATAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATTCTAAAGC
CCGGGAAAAAGCTGCCGATTGA
TTGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACAATCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCAGATTACGTCAATTGCACGCTTT
GGAGAAACACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCATAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATTCTAAAGC
CCGGGAAAAAGCTGCCGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
90.265 |
100 |
0.903 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
61.321 |
93.805 |
0.575 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
57.547 |
93.805 |
0.54 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.222 |
95.575 |
0.451 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.444 |
95.575 |
0.425 |
| ssbA | Streptococcus mutans UA159 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
40.566 |
93.805 |
0.381 |