Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   EBN1_RS08875 Genome accession   NC_006513
Coordinates   1884252..1885745 (+) Length   497 a.a.
NCBI ID   WP_011237611.1    Uniprot ID   -
Organism   Aromatoleum aromaticum EbN1     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1879252..1890745
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBN1_RS08850 (EB_RS08755) - 1879924..1880949 (+) 1026 WP_011237606.1 2-oxoacid:ferredoxin oxidoreductase subunit beta -
  EBN1_RS08855 (EB_RS08760) amt 1881092..1882444 (-) 1353 WP_011237607.1 ammonium transporter -
  EBN1_RS08860 (EB_RS08765) glnK 1882458..1882796 (-) 339 WP_011237608.1 P-II family nitrogen regulator -
  EBN1_RS08865 (EB_RS08770) - 1882846..1883577 (-) 732 WP_041646079.1 TorF family putative porin -
  EBN1_RS08870 (EB_RS08775) - 1883864..1884127 (+) 264 WP_011237610.1 accessory factor UbiK family protein -
  EBN1_RS08875 (EB_RS08780) comM 1884252..1885745 (+) 1494 WP_011237611.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  EBN1_RS08880 (EB_RS08785) - 1885892..1887076 (+) 1185 WP_011237612.1 multidrug effflux MFS transporter -
  EBN1_RS08885 (EB_RS24200) - 1887021..1887269 (-) 249 WP_011237613.1 hypothetical protein -
  EBN1_RS08890 (EB_RS08790) - 1887469..1888941 (+) 1473 WP_011237614.1 aldehyde dehydrogenase family protein -
  EBN1_RS08895 (EB_RS08795) - 1888990..1889328 (+) 339 WP_011237615.1 cytochrome c -
  EBN1_RS08900 (EB_RS08800) - 1889339..1890031 (+) 693 WP_011237616.1 hypothetical protein -

Sequence

Protein


Download         Length: 497 a.a.        Molecular weight: 53110.89 Da        Isoelectric Point: 7.9890

>NTDB_id=24110 EBN1_RS08875 WP_011237611.1 1884252..1885745(+) (comM) [Aromatoleum aromaticum EbN1]
MSLALIRTRALVGLAAPEVTVEVHLANGLPAFNLVGLADTEVREARDRVRAAIVTSQFEFPQRRITVNLAPADLPKEGGR
FDLPIALGILAASGQIDAGALSRHEFVGELSLNGALRPVRGALAVALETAREGRTLVLPVANADEAALAEDASVLAAASL
LAVCGHLNGRAVLPPHLPPLRSRSGPPEADLAEVKGQLQARRALEVAAAGQHSLLLFGPPGTGKSMLARRLPGLLPPMEQ
AEAIESAAIQSIEGSFDVRHWGRRPYRAPHHSASAPALVGGGADPRPGEISLAHHGVLFLDELPEFDRRVLEALREPLET
GLVTVSRARRRAEFPARFQLVAAMNPCPCGHAGSARCRCSPDQIARYRGKLSGPLLDRIDVIIEVPLLDQAEMLAQPAGE
SSEAVRSRVERAWACQRERQNEPNSRLAAGRVDALCAPDAEGRKLLAHAIERLNLSARGYHRILKVARTIADLADADAIG
PAHLAEAIQYRRGLDTR

Nucleotide


Download         Length: 1494 bp        

>NTDB_id=24110 EBN1_RS08875 WP_011237611.1 1884252..1885745(+) (comM) [Aromatoleum aromaticum EbN1]
ATGTCGCTGGCTCTCATACGTACCCGCGCGCTGGTCGGCCTCGCCGCACCGGAAGTGACGGTCGAAGTCCACCTCGCCAA
CGGCCTGCCTGCTTTCAACCTCGTCGGGCTCGCCGACACCGAGGTGCGCGAGGCGCGCGATCGCGTGCGGGCCGCGATCG
TCACGTCGCAGTTCGAGTTCCCGCAGCGTCGCATCACCGTCAACCTCGCCCCCGCCGACCTGCCGAAAGAGGGCGGGCGC
TTCGACCTGCCGATCGCGCTGGGCATCCTCGCGGCATCCGGCCAGATCGATGCGGGCGCGCTTTCGCGACACGAGTTCGT
CGGCGAACTGTCGCTGAATGGCGCACTGCGCCCGGTGCGTGGCGCGCTCGCGGTGGCGCTCGAAACCGCTCGTGAAGGCC
GCACGCTGGTGCTGCCGGTCGCCAACGCGGACGAGGCGGCGCTTGCGGAGGATGCGAGCGTGCTGGCCGCGGCGAGCCTG
CTCGCGGTGTGCGGGCACCTGAACGGGCGTGCCGTGCTTCCGCCTCACCTGCCTCCGCTGCGTAGCCGGAGCGGGCCGCC
CGAGGCCGATCTCGCCGAAGTCAAGGGACAGCTTCAGGCGCGCCGCGCGCTCGAAGTCGCCGCGGCCGGACAGCATTCGC
TGTTGCTGTTCGGGCCCCCGGGAACCGGCAAGTCGATGCTCGCACGGCGCCTGCCCGGGCTGCTGCCGCCGATGGAGCAG
GCCGAAGCGATCGAGAGCGCGGCGATCCAGTCGATCGAAGGCTCGTTCGACGTGCGGCACTGGGGACGCCGCCCGTATCG
CGCGCCGCACCACTCGGCCTCCGCGCCGGCGCTCGTCGGCGGCGGCGCCGATCCGCGGCCGGGCGAGATCAGCCTCGCGC
ACCACGGCGTGCTGTTTCTCGACGAACTGCCCGAATTCGACCGGCGCGTGCTCGAGGCACTGCGCGAGCCGCTCGAAACG
GGTCTCGTCACCGTGTCGCGCGCCCGGCGCCGCGCGGAATTCCCCGCCCGCTTCCAGCTCGTCGCGGCGATGAACCCCTG
TCCGTGCGGCCATGCCGGCAGCGCCCGCTGCCGCTGCTCGCCGGACCAGATCGCGCGCTACCGCGGCAAGCTGTCGGGCC
CGCTGCTCGATCGCATCGATGTCATCATCGAAGTGCCGCTGCTCGACCAGGCCGAGATGCTCGCGCAACCCGCTGGCGAA
TCGAGCGAAGCGGTGCGCTCACGCGTCGAGCGTGCGTGGGCGTGCCAACGCGAGCGCCAGAATGAGCCGAACAGCCGCTT
AGCGGCGGGCCGCGTGGACGCGTTGTGCGCGCCCGACGCCGAAGGCCGCAAGCTCCTGGCCCACGCGATCGAGCGGTTGA
ACCTGTCGGCGCGGGGTTATCATCGCATCCTGAAAGTCGCCCGCACGATCGCCGATCTGGCCGATGCCGACGCCATCGGT
CCGGCGCATCTGGCCGAGGCGATCCAGTATCGACGCGGGCTGGACACGCGATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(399-491)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

53.119

100

0.531
  comM Vibrio campbellii strain DS40M4

53.144

99.195

0.527
  comM Glaesserella parasuis strain SC1401

51.69

100

0.523
  comM Vibrio cholerae strain A1552

52.738

99.195

0.523
  comM Legionella pneumophila str. Paris

50.398

100

0.509
  comM Legionella pneumophila strain ERS1305867

50.398

100

0.509
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.309

100

0.457

Multiple sequence alignment