Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   BPSOL_RS00720 Genome accession   NZ_CP022544
Coordinates   175734..177587 (+) Length   617 a.a.
NCBI ID   WP_095507353.1    Uniprot ID   -
Organism   Bifidobacterium pseudolongum strain UMB-MBP-01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 170734..182587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPSOL_RS00705 (BPSOL_0149) - 171481..173001 (+) 1521 WP_095507352.1 amino acid permease -
  BPSOL_RS00710 (BPSOL_0150) - 173168..173740 (+) 573 WP_095508277.1 MarR family winged helix-turn-helix transcriptional regulator -
  BPSOL_RS00715 (BPSOL_0151) - 173766..175685 (+) 1920 WP_022858156.1 ABC transporter ATP-binding protein -
  BPSOL_RS00720 (BPSOL_0152) rcrQ 175734..177587 (+) 1854 WP_095507353.1 ABC transporter ATP-binding protein Regulator
  BPSOL_RS00725 (BPSOL_0153) - 177595..179025 (-) 1431 WP_095507354.1 polysaccharide deacetylase family protein -
  BPSOL_RS00730 (BPSOL_0154) - 179240..179623 (+) 384 WP_095507355.1 VOC family protein -
  BPSOL_RS00735 (BPSOL_0155) - 179808..180212 (-) 405 WP_022858152.1 hypothetical protein -
  BPSOL_RS00740 (BPSOL_0156) - 180321..180989 (+) 669 WP_095507356.1 phosphatase PAP2 family protein -
  BPSOL_RS00745 (BPSOL_0157) - 181504..182079 (-) 576 WP_095507357.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 67753.18 Da        Isoelectric Point: 4.9853

>NTDB_id=240533 BPSOL_RS00720 WP_095507353.1 175734..177587(+) (rcrQ) [Bifidobacterium pseudolongum strain UMB-MBP-01]
MPGGMGPHGPRGGAPTEKADDLGGALKDLMRFSRRYIPAIIVALVLGVVGTVCQIIGPDYLGDMTDEITKGLPAMINGKP
VLGAIDMAAVTRIGWTLVALYVAYALCSYVQSWMMATVTQRTAQRLRSAIDVKMNKLPLKYFDEHSNGDVMSRITNDVDA
VGQTLGQSLGSLITSVTLFFGALIMMFANNWLLALCAIAASLLGMVLMLVVMRFSQRYFVKQQAALGDVNGHVEEMYSGH
TVVKAFGGEADAIRRFERYNNDLYESGWKSQFLSGLMMPMMNLVGNLGYVVVCVVGAWLAMSGRIEFGVIVAFMLYIRFF
TQPLSQFAQAFQNLQRCAAGAERVFTFLNEPELADESSKQPLLGMGDDGEITPVEGRVSFEHVRFGYDADRMIIHDFSAD
VQPGQKVAIVGPTGAGKTTMVNLLMRFYEINGGKISIDGIDTKDVPRWNVHDQFSMVLQDTWVFQGTVRENIVYAKEGVS
DEQVVAACKAVGLHRYIMSLPEGYDTVLDESATLSQGQKQLLTIARAMVQDSPILILDEATSSVDTRTEELIQTAMDKLT
EGRTSFVIAHRLSTIRDADMILVMKDGDIVERGTHDELLARGGFYADIYNAQFSLAQ

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=240533 BPSOL_RS00720 WP_095507353.1 175734..177587(+) (rcrQ) [Bifidobacterium pseudolongum strain UMB-MBP-01]
ATGCCAGGAGGAATGGGGCCACACGGCCCGCGTGGTGGCGCGCCCACCGAAAAAGCGGATGACCTGGGCGGCGCGCTCAA
GGACCTGATGCGGTTCAGCCGCCGGTACATCCCGGCGATCATCGTCGCGCTCGTGCTGGGCGTGGTGGGCACGGTCTGCC
AGATCATCGGCCCGGATTATCTGGGTGACATGACCGACGAGATCACCAAGGGCCTGCCGGCGATGATCAACGGCAAGCCG
GTGCTGGGGGCCATCGACATGGCCGCCGTCACGCGCATCGGCTGGACGCTCGTGGCGCTGTATGTGGCGTACGCGCTGTG
CTCATACGTGCAGAGCTGGATGATGGCGACCGTCACGCAGCGCACGGCGCAGCGCCTGCGCTCGGCGATCGACGTGAAGA
TGAACAAACTGCCGCTCAAATACTTCGACGAGCACAGCAATGGCGACGTGATGAGCCGCATCACGAACGACGTGGACGCC
GTGGGGCAGACGCTCGGGCAGTCGCTCGGCTCACTGATCACCTCGGTCACGCTGTTCTTCGGCGCACTGATCATGATGTT
CGCGAACAACTGGCTGCTCGCGTTGTGCGCGATCGCGGCGAGCCTGCTGGGCATGGTGCTGATGCTCGTCGTCATGCGCT
TCTCGCAGCGGTACTTCGTCAAGCAGCAGGCCGCGCTCGGCGACGTCAACGGTCACGTCGAGGAGATGTACAGTGGGCAC
ACGGTCGTCAAGGCGTTCGGCGGCGAGGCGGACGCGATCCGCCGGTTCGAGCGCTACAACAACGACCTGTACGAGTCGGG
GTGGAAGAGCCAGTTCCTTTCCGGCCTGATGATGCCGATGATGAACCTCGTCGGTAATCTCGGGTATGTCGTCGTGTGTG
TCGTCGGCGCGTGGCTCGCGATGAGCGGGCGCATCGAATTCGGCGTCATCGTGGCGTTCATGTTGTACATCCGCTTCTTC
ACGCAGCCGCTTTCGCAGTTCGCGCAGGCGTTCCAGAACCTGCAGCGCTGCGCGGCCGGCGCCGAGCGCGTGTTCACGTT
CCTCAACGAACCGGAGCTCGCCGACGAATCGTCCAAGCAGCCACTGCTCGGCATGGGTGATGACGGCGAGATCACGCCGG
TCGAGGGGCGCGTGAGTTTCGAGCACGTCAGGTTCGGGTACGACGCCGACCGCATGATCATCCATGATTTCTCCGCGGAC
GTGCAGCCGGGGCAGAAGGTCGCGATCGTCGGGCCGACGGGCGCGGGCAAGACGACGATGGTCAACCTACTGATGCGGTT
CTATGAGATCAATGGCGGCAAGATCTCGATTGACGGCATCGACACCAAGGACGTGCCGCGCTGGAACGTGCATGACCAGT
TCTCGATGGTGCTGCAGGACACCTGGGTGTTCCAAGGCACTGTGCGCGAGAACATCGTCTACGCGAAGGAAGGCGTGAGC
GACGAGCAGGTCGTCGCGGCGTGCAAGGCCGTGGGGTTGCACCGCTACATCATGTCGCTGCCCGAGGGCTACGACACCGT
GCTCGACGAGTCGGCCACGCTGTCGCAAGGCCAGAAGCAGCTGCTGACGATCGCGCGCGCGATGGTGCAGGATTCGCCGA
TCCTGATCCTCGACGAGGCGACGAGTTCGGTCGACACGCGCACCGAGGAACTGATCCAGACGGCGATGGACAAGCTCACC
GAAGGGCGCACGAGTTTCGTCATCGCGCACCGCCTCTCCACGATCCGCGACGCCGACATGATCCTCGTCATGAAGGACGG
CGACATCGTGGAACGCGGCACACACGACGAGCTGCTCGCGCGCGGCGGTTTCTACGCCGACATCTACAACGCGCAGTTCT
CCCTGGCGCAGTAG

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(40-324)

ABC transporter (ABC_tran)

(395-542)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

55.846

92.869

0.519

Multiple sequence alignment