Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | PBPR_RS16270 | Genome accession | NC_006370 |
| Coordinates | 3636200..3636607 (+) | Length | 135 a.a. |
| NCBI ID | WP_011219760.1 | Uniprot ID | Q6LMH1 |
| Organism | Photobacterium profundum SS9 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3631200..3641607
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PBPR_RS16255 (PBPRA3197) | pdhR | 3633170..3633943 (-) | 774 | WP_011219757.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| PBPR_RS16260 (PBPRA3198) | ampD | 3634275..3634832 (-) | 558 | WP_011219758.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| PBPR_RS16265 (PBPRA3199) | nadC | 3635008..3635898 (+) | 891 | WP_041394824.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| PBPR_RS16270 (PBPRA3200) | pilA | 3636200..3636607 (+) | 408 | WP_011219760.1 | pilin | Machinery gene |
| PBPR_RS16275 (PBPRA3201) | pilB | 3636612..3638297 (+) | 1686 | WP_041394533.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PBPR_RS16280 (PBPRA3202) | pilC | 3638397..3639617 (+) | 1221 | WP_011219762.1 | type II secretion system F family protein | Machinery gene |
| PBPR_RS16285 (PBPRA3203) | pilD | 3639765..3640664 (+) | 900 | WP_011219763.1 | prepilin peptidase | Machinery gene |
| PBPR_RS16290 (PBPRA3204) | coaE | 3640667..3641269 (+) | 603 | WP_011219764.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 135 a.a. Molecular weight: 14187.42 Da Isoelectric Point: 5.1208
>NTDB_id=23891 PBPR_RS16270 WP_011219760.1 3636200..3636607(+) (pilA) [Photobacterium profundum SS9]
MKKMQKGFTLIELMIVVAIIGALSAIAIPAYKDYVKKSELAAAVATMKALVTEAELIYQEKGAVVSTTPLTDLGTKADAN
PLGVISVSADNNLQFKFGDNSASKDLLVTFDRSATGWACTQTTGAEIDSCPAPKS
MKKMQKGFTLIELMIVVAIIGALSAIAIPAYKDYVKKSELAAAVATMKALVTEAELIYQEKGAVVSTTPLTDLGTKADAN
PLGVISVSADNNLQFKFGDNSASKDLLVTFDRSATGWACTQTTGAEIDSCPAPKS
Nucleotide
Download Length: 408 bp
>NTDB_id=23891 PBPR_RS16270 WP_011219760.1 3636200..3636607(+) (pilA) [Photobacterium profundum SS9]
ATGAAAAAGATGCAAAAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCAATTATTGGTGCTCTATCTGCAATCGC
TATTCCAGCATATAAAGATTATGTGAAAAAGAGTGAGTTAGCAGCTGCTGTTGCTACGATGAAGGCATTGGTAACAGAAG
CTGAATTAATTTATCAAGAAAAAGGGGCTGTTGTAAGTACTACCCCCCTCACCGACTTAGGTACGAAAGCTGATGCCAAC
CCATTAGGAGTAATATCTGTATCAGCAGATAATAATCTGCAATTTAAATTTGGGGATAACAGTGCTTCAAAGGACTTGCT
AGTCACTTTTGATCGTTCTGCTACTGGTTGGGCTTGTACACAAACTACAGGCGCCGAGATTGATAGCTGCCCAGCACCTA
AATCTTAA
ATGAAAAAGATGCAAAAAGGTTTTACGCTAATTGAATTGATGATTGTGGTGGCAATTATTGGTGCTCTATCTGCAATCGC
TATTCCAGCATATAAAGATTATGTGAAAAAGAGTGAGTTAGCAGCTGCTGTTGCTACGATGAAGGCATTGGTAACAGAAG
CTGAATTAATTTATCAAGAAAAAGGGGCTGTTGTAAGTACTACCCCCCTCACCGACTTAGGTACGAAAGCTGATGCCAAC
CCATTAGGAGTAATATCTGTATCAGCAGATAATAATCTGCAATTTAAATTTGGGGATAACAGTGCTTCAAAGGACTTGCT
AGTCACTTTTGATCGTTCTGCTACTGGTTGGGCTTGTACACAAACTACAGGCGCCGAGATTGATAGCTGCCCAGCACCTA
AATCTTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
49.254 |
99.259 |
0.489 |
| pilA | Pseudomonas aeruginosa PAK |
44.444 |
100 |
0.444 |
| pilA | Vibrio cholerae strain A1552 |
39.073 |
100 |
0.437 |
| pilA | Vibrio cholerae C6706 |
39.073 |
100 |
0.437 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
39.073 |
100 |
0.437 |
| comE | Acinetobacter baylyi ADP1 |
31.792 |
100 |
0.407 |
| comP | Acinetobacter baylyi ADP1 |
45.133 |
83.704 |
0.378 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
37.984 |
95.556 |
0.363 |