Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   PBPR_RS16280 Genome accession   NC_006370
Coordinates   3638397..3639617 (+) Length   406 a.a.
NCBI ID   WP_011219762.1    Uniprot ID   Q6LMG9
Organism   Photobacterium profundum SS9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3633397..3644617
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PBPR_RS16260 (PBPRA3198) ampD 3634275..3634832 (-) 558 WP_011219758.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  PBPR_RS16265 (PBPRA3199) nadC 3635008..3635898 (+) 891 WP_041394824.1 carboxylating nicotinate-nucleotide diphosphorylase -
  PBPR_RS16270 (PBPRA3200) pilA 3636200..3636607 (+) 408 WP_011219760.1 pilin Machinery gene
  PBPR_RS16275 (PBPRA3201) pilB 3636612..3638297 (+) 1686 WP_041394533.1 type IV-A pilus assembly ATPase PilB Machinery gene
  PBPR_RS16280 (PBPRA3202) pilC 3638397..3639617 (+) 1221 WP_011219762.1 type II secretion system F family protein Machinery gene
  PBPR_RS16285 (PBPRA3203) pilD 3639765..3640664 (+) 900 WP_011219763.1 prepilin peptidase Machinery gene
  PBPR_RS16290 (PBPRA3204) coaE 3640667..3641269 (+) 603 WP_011219764.1 dephospho-CoA kinase -
  PBPR_RS16295 (PBPRA3205) zapD 3641324..3642061 (+) 738 WP_011219765.1 cell division protein ZapD -
  PBPR_RS16300 (PBPRA3206) yacG 3642070..3642285 (+) 216 WP_041394534.1 DNA gyrase inhibitor YacG -
  PBPR_RS16305 (PBPRA3207) mutT 3642309..3642728 (-) 420 WP_011219767.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 45002.05 Da        Isoelectric Point: 9.9772

>NTDB_id=23893 PBPR_RS16280 WP_011219762.1 3638397..3639617(+) (pilC) [Photobacterium profundum SS9]
MNPATKLRYYHWRGLNQAGRKVSGVIIGYQEQEVRSKLTEQRIHIKKIKRRKPSTFSKLRNQMKPEDITETTRQLATMIE
SGVPVVQSLKLIANSHHKAEVRATLSQVTMQVEAGASLSKALKTSSPLFDDFYCDLVATGEQTGHLGEVFSRIATYREKG
EIMRKKVIKAMIYPTMVTLTAVIVTVMMLIFVIPQFASIFSSFGAELPLFTQLVINASDFLIAHGLYFTIGLVSIICLYY
YSHKKSYNFRLKVDRLSLRLPILGNVLLKATIARFARTLATTFTAGIPLLSGLQSAGKTAGNLYIANAVYEAHANTAAGM
PLYLALRQSGVFPELMLQMTMIGEESGSLDDMLNKMALLYENDVDNTVDNLGKILEPLIIIILGGLIGGLLVAMYMPIFS
LMSVMG

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=23893 PBPR_RS16280 WP_011219762.1 3638397..3639617(+) (pilC) [Photobacterium profundum SS9]
ATGAATCCAGCCACTAAATTACGTTATTACCATTGGCGCGGCTTAAACCAAGCAGGGCGTAAAGTCTCTGGCGTCATTAT
TGGCTATCAAGAACAAGAAGTTCGTAGCAAACTGACCGAACAAAGGATCCATATAAAAAAAATTAAACGACGTAAGCCTT
CAACCTTCAGTAAACTCAGAAACCAAATGAAACCTGAAGATATTACGGAAACCACTCGTCAATTAGCCACCATGATCGAA
TCTGGCGTGCCTGTTGTTCAATCGTTAAAGCTGATTGCTAATAGCCACCACAAAGCAGAAGTGCGTGCAACACTCAGCCA
AGTAACCATGCAAGTTGAAGCGGGAGCATCACTGTCTAAAGCCTTGAAAACCAGCTCACCACTGTTTGATGATTTCTATT
GTGATCTGGTGGCAACCGGAGAGCAAACTGGTCACCTTGGCGAGGTCTTTTCGCGTATAGCCACTTACCGTGAAAAAGGC
GAAATTATGCGAAAAAAAGTCATCAAAGCCATGATCTACCCTACTATGGTTACCCTTACTGCTGTCATCGTCACCGTGAT
GATGCTGATATTTGTTATCCCTCAGTTTGCCAGCATATTCAGTAGTTTTGGCGCTGAATTGCCACTGTTTACCCAGCTAG
TGATTAATGCCTCAGATTTTTTGATCGCTCATGGGCTTTACTTCACCATCGGACTCGTGTCGATAATTTGCCTGTATTAT
TACAGCCATAAAAAATCGTATAACTTTAGATTGAAAGTCGACCGATTGAGTTTACGGTTACCCATTTTAGGCAATGTATT
ATTGAAAGCGACCATTGCACGGTTTGCCCGTACCCTTGCCACCACCTTCACTGCCGGTATTCCCTTGCTTTCGGGTTTAC
AATCTGCCGGTAAAACTGCCGGTAACTTGTATATTGCAAATGCAGTGTATGAGGCTCACGCCAATACTGCGGCTGGTATG
CCGTTATATCTCGCCCTACGCCAGTCTGGCGTTTTTCCTGAGCTTATGTTGCAGATGACAATGATCGGTGAAGAATCAGG
TTCGCTAGACGACATGCTCAACAAAATGGCCCTGCTATACGAAAATGATGTCGATAATACGGTTGATAATCTGGGTAAAA
TTCTCGAACCTTTAATCATCATTATTTTAGGTGGGTTAATCGGCGGCTTATTAGTCGCGATGTATATGCCGATATTCAGC
TTAATGAGCGTGATGGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(72-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q6LMG9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio cholerae strain A1552

55.5

98.522

0.547
  pilC Vibrio campbellii strain DS40M4

53.846

99.261

0.534
  pilC Pseudomonas stutzeri DSM 10701

42.537

99.015

0.421
  pilG Neisseria gonorrhoeae MS11

41.191

99.261

0.409
  pilG Neisseria meningitidis 44/76-A

41.191

99.261

0.409
  pilC Legionella pneumophila strain ERS1305867

40.506

97.291

0.394
  pilC Acinetobacter baylyi ADP1

39.798

97.783

0.389
  pilC Acinetobacter baumannii D1279779

39.295

97.783

0.384

Multiple sequence alignment