Detailed information NTG0023894

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: PBPR_RS16285
• Genome accession: NC_006370
• Coordinates: 3639765..3640664 (+)
• Length: 299 a.a.
• NCBI ID: WP_011219763.1
• Uniprot ID: Q6LMG8
• Organism: Photobacterium profundum SS9
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3634765..3645664

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PBPR_RS16265 (PBPRA3199)	nadC	3635008..3635898 (+)	891	WP_041394824.1	carboxylating nicotinate-nucleotide diphosphorylase	-
PBPR_RS16270 (PBPRA3200)	pilA	3636200..3636607 (+)	408	WP_011219760.1	pilin	Machinery gene
PBPR_RS16275 (PBPRA3201)	pilB	3636612..3638297 (+)	1686	WP_041394533.1	type IV-A pilus assembly ATPase PilB	Machinery gene
PBPR_RS16280 (PBPRA3202)	pilC	3638397..3639617 (+)	1221	WP_011219762.1	type II secretion system F family protein	Machinery gene
PBPR_RS16285 (PBPRA3203)	pilD	3639765..3640664 (+)	900	WP_011219763.1	prepilin peptidase	Machinery gene
PBPR_RS16290 (PBPRA3204)	coaE	3640667..3641269 (+)	603	WP_011219764.1	dephospho-CoA kinase	-
PBPR_RS16295 (PBPRA3205)	zapD	3641324..3642061 (+)	738	WP_011219765.1	cell division protein ZapD	-
PBPR_RS16300 (PBPRA3206)	yacG	3642070..3642285 (+)	216	WP_041394534.1	DNA gyrase inhibitor YacG	-
PBPR_RS16305 (PBPRA3207)	mutT	3642309..3642728 (-)	420	WP_011219767.1	8-oxo-dGTP diphosphatase MutT	-
PBPR_RS16310 (PBPRA3208)	secA	3642881..3645613 (-)	2733	WP_011219768.1	preprotein translocase subunit SecA	-

Sequence

Protein

• Length: 299 a.a.
• Molecular weight: 33291.53 Da
• Isoelectric Point: 6.4638

>NTDB_id=23894 PBPR_RS16285 WP_011219763.1 3639765..3640664(+) (pilD) [Photobacterium profundum SS9]
MELFTYYPWLFPVFAAIFGLLIGSFLNVVIHRLPIMMERQWKADCIECFPEFDKENKQEKDNNSVATTPVFNLSVPRSRC
PHCQHAITMWENIPVISWLVLKGKCSACGAKISARYPTIELLTAVMTTIISLMLPSSLWAVAVIFFSFALIALTFIDIDT
MLLPDQITLPLMWAGIAAALVGLSPVSLQDAIIGAMVGYLSLWSLFWSFKLITGKEGMGYGDFKLLAALGAWLGWQSLPF
VVLLSSLVGAVCGIILLRVQRSDSQTPFSFGPYLAMAGWISILWGDQVISWYLHSYIGM

Nucleotide

• Length: 900 bp

>NTDB_id=23894 PBPR_RS16285 WP_011219763.1 3639765..3640664(+) (pilD) [Photobacterium profundum SS9]
ATGGAATTGTTTACATACTACCCTTGGTTATTTCCGGTTTTCGCCGCTATTTTTGGTTTGCTCATTGGTAGTTTTTTGAA
TGTGGTGATCCACCGCTTACCGATCATGATGGAACGTCAATGGAAAGCCGATTGCATTGAATGCTTTCCTGAATTTGATA
AAGAAAATAAACAAGAGAAAGATAATAATTCCGTCGCAACAACGCCTGTTTTTAATCTTAGTGTGCCGCGCTCACGCTGC
CCTCATTGCCAACACGCCATCACCATGTGGGAAAACATCCCTGTCATTAGTTGGTTAGTGTTAAAAGGGAAATGCAGTGC
CTGCGGTGCAAAAATCAGTGCTCGCTACCCTACCATTGAATTGCTGACTGCGGTCATGACCACCATTATCTCGCTCATGT
TACCGTCATCATTGTGGGCTGTTGCGGTTATCTTTTTCAGCTTCGCCCTGATTGCCCTGACTTTTATTGATATCGATACC
ATGTTACTGCCGGATCAAATTACCCTCCCTTTAATGTGGGCTGGTATTGCAGCGGCCCTCGTGGGCTTGAGCCCTGTATC
ACTGCAAGATGCCATTATTGGTGCGATGGTGGGCTATCTGTCACTTTGGAGCCTATTCTGGAGCTTTAAACTGATCACAG
GCAAGGAAGGCATGGGATACGGTGATTTTAAGCTGTTAGCGGCTTTGGGCGCTTGGCTGGGCTGGCAAAGTTTACCTTTT
GTGGTATTACTTTCTTCCTTGGTTGGCGCAGTTTGTGGCATTATCTTATTAAGAGTGCAACGTTCTGATTCACAAACACC
TTTTTCATTTGGTCCTTACCTTGCTATGGCGGGCTGGATTAGCATTCTATGGGGCGATCAAGTTATTAGCTGGTATCTCC
ATTCATATATAGGCATGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-132)

• Type IV leader peptidase family (Peptidase_A24) (145-254)

3D structure

• AlphaFold DB: Q6LMG8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	61.745	99.666	0.615
pilD	Vibrio campbellii strain DS40M4	61.204	100	0.612
pilD	Acinetobacter baumannii D1279779	49.281	92.977	0.458
pilD	Acinetobacter nosocomialis M2	49.281	92.977	0.458
pilD	Neisseria gonorrhoeae MS11	45.763	98.662	0.452