Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CCX84_RS14905 Genome accession   NZ_CP022345
Coordinates   2802283..2802618 (-) Length   111 a.a.
NCBI ID   WP_000982015.1    Uniprot ID   A0A9X7QJP1
Organism   Bacillus thuringiensis strain c25     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2802283..2858735 2802283..2802618 within 0


Gene organization within MGE regions


Location: 2802283..2858735
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCX84_RS14905 ssbA 2802283..2802618 (-) 336 WP_000982015.1 single-stranded DNA-binding protein Machinery gene
  CCX84_RS14910 - 2802780..2803034 (-) 255 WP_000975131.1 DUF4318 domain-containing protein -
  CCX84_RS14915 - 2803139..2803870 (-) 732 WP_001260655.1 Bax inhibitor-1/YccA family protein -
  CCX84_RS14920 - 2803946..2805841 (-) 1896 WP_061139360.1 ABC-F family ATP-binding cassette domain-containing protein -
  CCX84_RS14925 - 2805838..2806485 (-) 648 WP_000165966.1 HD domain-containing protein -
  CCX84_RS14930 - 2806595..2807377 (+) 783 WP_000499720.1 hypothetical protein -
  CCX84_RS14935 - 2807800..2808015 (-) 216 WP_000756629.1 hypothetical protein -
  CCX84_RS14940 - 2808012..2809112 (-) 1101 WP_172794111.1 aspartate phosphatase -
  CCX84_RS14945 - 2809467..2810120 (+) 654 WP_061139362.1 hypothetical protein -
  CCX84_RS30470 - 2810190..2810405 (+) 216 WP_340637552.1 hypothetical protein -
  CCX84_RS14950 - 2810472..2811530 (-) 1059 WP_061139363.1 N-acetylmuramoyl-L-alanine amidase -
  CCX84_RS14955 - 2811610..2812107 (-) 498 WP_000439588.1 phage holin family protein -
  CCX84_RS14965 - 2812416..2813336 (-) 921 WP_061139364.1 hypothetical protein -
  CCX84_RS14970 - 2813350..2813733 (-) 384 WP_061139365.1 hypothetical protein -
  CCX84_RS14975 - 2813743..2815248 (-) 1506 WP_232487790.1 cell adhesion protein -
  CCX84_RS14980 - 2815230..2817452 (-) 2223 WP_061139366.1 hypothetical protein -
  CCX84_RS14985 - 2817476..2819203 (-) 1728 WP_061139367.1 hypothetical protein -
  CCX84_RS14990 - 2819217..2820554 (-) 1338 WP_017673857.1 hypothetical protein -
  CCX84_RS14995 - 2820568..2820945 (-) 378 WP_017673856.1 hypothetical protein -
  CCX84_RS15000 - 2820958..2821332 (-) 375 WP_061139368.1 hypothetical protein -
  CCX84_RS15005 - 2821377..2821760 (-) 384 WP_017673854.1 hypothetical protein -
  CCX84_RS15010 - 2821771..2823315 (-) 1545 WP_061139369.1 hypothetical protein -
  CCX84_RS15015 - 2823312..2823995 (-) 684 WP_061139370.1 hypothetical protein -
  CCX84_RS15020 - 2823992..2825998 (-) 2007 WP_061139371.1 hypothetical protein -
  CCX84_RS15025 - 2826223..2827155 (-) 933 Protein_2870 phage tail tape measure protein -
  CCX84_RS15030 - 2827190..2827609 (-) 420 WP_061139372.1 hypothetical protein -
  CCX84_RS15035 - 2827573..2828091 (-) 519 WP_061139373.1 hypothetical protein -
  CCX84_RS15040 - 2828151..2828753 (-) 603 WP_061139374.1 hypothetical protein -
  CCX84_RS15045 - 2828766..2829188 (-) 423 WP_000063397.1 hypothetical protein -
  CCX84_RS15050 - 2829192..2829602 (-) 411 WP_061139375.1 HK97-gp10 family putative phage morphogenesis protein -
  CCX84_RS15055 - 2829609..2829980 (-) 372 WP_061139376.1 hypothetical protein -
  CCX84_RS15060 - 2829977..2830513 (-) 537 WP_061139377.1 hypothetical protein -
  CCX84_RS15065 - 2830513..2830677 (-) 165 WP_000869887.1 YqbF domain-containing protein -
  CCX84_RS15070 - 2830848..2831834 (-) 987 WP_061139378.1 phage major capsid protein -
  CCX84_RS15075 - 2831851..2833053 (-) 1203 WP_061139379.1 XkdF-like putative serine protease domain-containing protein -
  CCX84_RS15080 - 2833167..2833685 (-) 519 WP_061139380.1 phage minor head protein -
  CCX84_RS15085 - 2833799..2835277 (-) 1479 WP_061139381.1 phage portal protein -
  CCX84_RS15090 - 2835347..2836624 (-) 1278 WP_061139382.1 PBSX family phage terminase large subunit -
  CCX84_RS15095 terS 2836617..2837444 (-) 828 WP_061139383.1 phage terminase small subunit -
  CCX84_RS15100 - 2837466..2837645 (-) 180 WP_061139384.1 hypothetical protein -
  CCX84_RS15105 - 2837743..2837964 (+) 222 WP_000265602.1 hypothetical protein -
  CCX84_RS15110 - 2838095..2838637 (-) 543 WP_061139385.1 site-specific integrase -
  CCX84_RS15115 - 2839105..2839311 (+) 207 WP_061139386.1 hypothetical protein -
  CCX84_RS30995 - 2839438..2839560 (-) 123 WP_098224024.1 DNA translocase FtsK -
  CCX84_RS15125 - 2840015..2840233 (-) 219 WP_000930974.1 hypothetical protein -
  CCX84_RS15130 - 2840640..2841590 (-) 951 WP_061139387.1 nucleoside hydrolase -
  CCX84_RS15135 - 2841810..2842352 (-) 543 WP_061139388.1 site-specific integrase -
  CCX84_RS15140 - 2842327..2842834 (-) 508 Protein_2893 ArpU family phage packaging/lysis transcriptional regulator -
  CCX84_RS15155 - 2844818..2846107 (+) 1290 WP_061139390.1 hypothetical protein -
  CCX84_RS15160 - 2847229..2847798 (+) 570 WP_001199851.1 cupin domain-containing protein -
  CCX84_RS15170 - 2848663..2849049 (-) 387 WP_061139391.1 hypothetical protein -
  CCX84_RS15175 - 2849572..2849763 (-) 192 WP_061139392.1 DUF3954 domain-containing protein -
  CCX84_RS15180 - 2849835..2850197 (-) 363 WP_001125986.1 hypothetical protein -
  CCX84_RS15185 - 2850208..2851191 (-) 984 WP_061139393.1 DnaD domain protein -
  CCX84_RS15190 - 2851309..2851593 (-) 285 WP_061139394.1 hypothetical protein -
  CCX84_RS15195 - 2851775..2851996 (-) 222 WP_061139395.1 hypothetical protein -
  CCX84_RS15200 - 2852027..2852542 (-) 516 WP_061139396.1 helix-turn-helix transcriptional regulator -
  CCX84_RS15205 - 2852610..2852909 (-) 300 WP_061139397.1 helix-turn-helix domain-containing protein -
  CCX84_RS15210 - 2852936..2853157 (-) 222 WP_061139398.1 helix-turn-helix transcriptional regulator -
  CCX84_RS15215 - 2853300..2853644 (+) 345 WP_061139399.1 helix-turn-helix transcriptional regulator -
  CCX84_RS15220 - 2853734..2854771 (-) 1038 WP_061139400.1 hypothetical protein -
  CCX84_RS15225 - 2854775..2856115 (-) 1341 WP_061139401.1 ATP-binding protein -
  CCX84_RS15235 - 2857060..2857578 (+) 519 WP_061139402.1 ImmA/IrrE family metallo-endopeptidase -
  CCX84_RS15240 - 2857599..2858735 (+) 1137 WP_061139403.1 site-specific integrase -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12740.60 Da        Isoelectric Point: 9.7036

>NTDB_id=238534 CCX84_RS14905 WP_000982015.1 2802283..2802618(-) (ssbA) [Bacillus thuringiensis strain c25]
MMNRVVLIGRLTKEPELYYTKQGVAYARICVAVNRGFRNSLGEQQVDFINCVVWRKSAENVAEYCKKGSLVGITGRIQTS
NYNDEQGKRIYRTEVVIESITFLERRREGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=238534 CCX84_RS14905 WP_000982015.1 2802283..2802618(-) (ssbA) [Bacillus thuringiensis strain c25]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGAGCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCGGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGTCGATTTTATTAATTGTGTCGTTT
GGCGCAAATCGGCTGAGAATGTAGCTGAATATTGTAAGAAGGGGTCGCTCGTTGGGATTACAGGGCGTATTCAGACTAGT
AATTACAATGATGAACAAGGCAAGAGAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGCG
GGAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

59.434

95.495

0.568
  ssb Latilactobacillus sakei subsp. sakei 23K

56.604

95.495

0.541
  ssbB Bacillus subtilis subsp. subtilis str. 168

51.786

100

0.523
  ssbB Lactococcus lactis subsp. cremoris KW2

45.714

94.595

0.432
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbA Streptococcus mutans UA159

40.909

99.099

0.405
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae TIGR4

40.909

99.099

0.405
  ssbB/cilA Streptococcus pneumoniae D39

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae R6

40

99.099

0.396
  ssbB/cilA Streptococcus mitis SK321

40

99.099

0.396
  ssbB/cilA Streptococcus pneumoniae Rx1

40

99.099

0.396

Multiple sequence alignment