Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   CEG15_RS11865 Genome accession   NZ_CP022099
Coordinates   2589395..2591080 (-) Length   561 a.a.
NCBI ID   WP_412767344.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2584395..2596080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS11845 (CEG15_11845) - 2585126..2585956 (-) 831 WP_088729178.1 Dam family site-specific DNA-(adenine-N6)-methyltransferase -
  CEG15_RS11850 (CEG15_11850) - 2586026..2587525 (-) 1500 WP_017049208.1 SPOR domain-containing protein -
  CEG15_RS11855 (CEG15_11855) aroB 2587574..2588662 (-) 1089 WP_026027426.1 3-dehydroquinate synthase -
  CEG15_RS11860 (CEG15_11860) aroK 2588687..2589208 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CEG15_RS11865 (CEG15_11865) pilQ 2589395..2591080 (-) 1686 WP_412767344.1 type IV pilus secretin PilQ Machinery gene
  CEG15_RS11870 (CEG15_11870) pilP 2591134..2591655 (-) 522 WP_017047272.1 pilus assembly protein PilP Machinery gene
  CEG15_RS11875 (CEG15_11875) pilO 2591642..2592235 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CEG15_RS11880 (CEG15_11880) pilN 2592228..2592830 (-) 603 WP_064625964.1 PilN domain-containing protein Machinery gene
  CEG15_RS11885 (CEG15_11885) pilM 2592820..2593830 (-) 1011 WP_088729180.1 type IV pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 561 a.a.        Molecular weight: 61128.33 Da        Isoelectric Point: 4.8150

>NTDB_id=236739 CEG15_RS11865 WP_412767344.1 2589395..2591080(-) (pilQ) [Vibrio anguillarum strain S3 4/9]
MVFRSLLFGLLLSVAGLSVAAETAQTNELKGIDFRVNKNKDAVLIVELASPSTVVNVQKVADGLQIELLKTDVSNEKLYV
LDVKDFATVVESIEVLRKEPSTQLLATIHGEFKYDYSLKGKYLEVVIGKLKEQEKPKPKSILEKEGKLISINFQDIPVRN
VLQLIADYNAFNLVVSDSVTGNLTLRLDGVPWQQVLDIILQVKGLDKRVDGNVILVAPKEELDLREKQQLEKARLAEELG
DLRSEIIKINFAKASDIAQMIGGEGAVSMLSERGSISIDDRTNSLLIRELAENIVVIRQIVESLDIPVKQVQIEARIVTV
NEGNLDELGVRWGFTSTNGNNTAGGSIESNLFQVGKLGESTLPVDDFLNVNLAATSANASSIAFQVAKLGSDMLLDLELS
ALQRESKAEIISSPRLITTNKKPAYIEQGTEIPYLESSSSGATTVAFKKAVLSLKVTPQITPDNRLVLDLSVTQDRPGDI
VKTGTGEAVAINTQRIGTQVLVNNGETVVLGGIFQHSVNNTVDKVPLLGDLPLLGALFRRSYEQVGKSELLIFVTPKVVI
Q

Nucleotide


Download         Length: 1686 bp        

>NTDB_id=236739 CEG15_RS11865 WP_412767344.1 2589395..2591080(-) (pilQ) [Vibrio anguillarum strain S3 4/9]
ATGGTATTTCGGAGCCTCTTATTTGGCTTATTATTGAGTGTGGCAGGGCTAAGTGTGGCGGCAGAAACGGCGCAGACCAA
CGAGCTTAAAGGCATTGATTTTCGAGTCAATAAAAACAAAGATGCGGTATTGATTGTTGAACTCGCATCACCTTCGACAG
TAGTTAATGTGCAGAAAGTGGCTGACGGTTTACAAATTGAATTGCTTAAGACGGATGTCTCCAATGAGAAACTGTATGTC
TTGGATGTCAAAGATTTTGCAACCGTTGTTGAGAGTATCGAGGTATTGCGCAAAGAGCCAAGTACACAGTTACTGGCGAC
CATTCATGGCGAGTTTAAGTATGATTACAGCTTGAAAGGGAAATACCTTGAGGTGGTAATTGGCAAACTGAAAGAACAAG
AAAAACCTAAGCCGAAGAGCATTCTTGAGAAAGAGGGCAAGCTTATCTCGATTAACTTTCAAGATATTCCTGTGCGAAAT
GTTTTGCAGCTTATCGCAGATTATAACGCGTTTAACTTAGTCGTCTCAGATTCGGTCACTGGTAACCTGACGCTACGGCT
TGATGGCGTGCCTTGGCAGCAAGTGCTCGATATCATTTTGCAAGTCAAGGGATTAGATAAGCGTGTTGACGGCAATGTGA
TTTTAGTTGCACCTAAAGAAGAGTTGGATTTACGTGAAAAGCAGCAGCTTGAAAAGGCACGTTTGGCTGAAGAGTTGGGC
GATCTGCGTTCTGAAATCATCAAAATTAATTTTGCTAAGGCGTCTGATATTGCGCAGATGATTGGCGGTGAAGGGGCAGT
TAGTATGTTGTCTGAGCGAGGTTCCATCAGTATCGACGATCGAACTAACTCACTGCTGATCCGTGAATTGGCTGAGAATA
TTGTGGTGATACGTCAAATCGTCGAATCGCTCGATATTCCGGTCAAACAGGTGCAGATTGAAGCGCGCATTGTTACGGTC
AACGAAGGTAATTTGGATGAACTTGGCGTACGCTGGGGCTTCACCTCGACCAATGGTAATAACACGGCAGGTGGAAGTAT
TGAAAGTAATTTATTTCAAGTGGGTAAGTTGGGGGAAAGCACATTGCCTGTCGATGATTTCCTTAACGTAAATTTAGCTG
CGACCTCAGCTAACGCCTCAAGCATTGCTTTCCAAGTGGCTAAGTTAGGGTCGGATATGTTGTTGGATTTAGAGCTTTCA
GCGCTACAACGTGAGTCGAAAGCGGAGATCATTTCAAGCCCTCGTTTGATCACGACCAACAAAAAACCAGCCTATATCGA
ACAAGGTACCGAGATCCCTTATCTGGAGTCCTCTTCCAGCGGTGCAACGACGGTCGCCTTCAAAAAAGCAGTGCTGAGTT
TGAAAGTGACGCCGCAGATAACGCCGGATAATCGCTTAGTGTTAGACCTCAGTGTCACTCAAGACCGGCCTGGGGATATT
GTAAAAACAGGGACGGGAGAAGCGGTTGCAATTAATACTCAGCGTATTGGCACTCAAGTATTGGTCAACAATGGAGAAAC
CGTGGTCCTTGGTGGAATATTCCAACATAGCGTCAACAATACGGTGGATAAGGTTCCATTGCTTGGTGATTTGCCATTAC
TTGGTGCATTGTTCCGCCGTTCCTATGAGCAAGTGGGCAAAAGTGAGCTGCTGATTTTCGTGACACCGAAAGTCGTCATT
CAATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(245-310)

Bacterial type II and III secretion system protein (Secretin)

(401-559)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Vibrio cholerae O1 biovar El Tor strain E7946

83.363

99.643

0.831
  pilQ Vibrio cholerae strain A1552

83.363

99.643

0.831
  pilQ Vibrio campbellii strain DS40M4

78.947

98.217

0.775
  pilQ Legionella pneumophila strain Lp02

42.222

96.257

0.406
  pilQ Legionella pneumophila strain ERS1305867

42.222

96.257

0.406
  pilQ Pseudomonas aeruginosa PAK

40.036

98.396

0.394
  comQ Acinetobacter baylyi ADP1

39.247

99.465

0.39
  pilQ Acinetobacter baumannii D1279779

36.833

100

0.381
  pilQ Acinetobacter baumannii strain A118

36.833

100

0.381

Multiple sequence alignment