Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   CEG15_RS11885 Genome accession   NZ_CP022099
Coordinates   2592820..2593830 (-) Length   336 a.a.
NCBI ID   WP_088729180.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2587820..2598830
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS11860 (CEG15_11860) aroK 2588687..2589208 (-) 522 WP_010317691.1 shikimate kinase AroK -
  CEG15_RS11865 (CEG15_11865) pilQ 2589395..2591080 (-) 1686 WP_412767344.1 type IV pilus secretin PilQ Machinery gene
  CEG15_RS11870 (CEG15_11870) pilP 2591134..2591655 (-) 522 WP_017047272.1 pilus assembly protein PilP Machinery gene
  CEG15_RS11875 (CEG15_11875) pilO 2591642..2592235 (-) 594 WP_013855887.1 type 4a pilus biogenesis protein PilO Machinery gene
  CEG15_RS11880 (CEG15_11880) pilN 2592228..2592830 (-) 603 WP_064625964.1 PilN domain-containing protein Machinery gene
  CEG15_RS11885 (CEG15_11885) pilM 2592820..2593830 (-) 1011 WP_088729180.1 type IV pilus assembly protein PilM Machinery gene
  CEG15_RS11890 (CEG15_11890) - 2593980..2596478 (+) 2499 WP_088729181.1 penicillin-binding protein 1A -
  CEG15_RS11895 (CEG15_11895) oxyR 2596515..2597405 (-) 891 WP_026027425.1 DNA-binding transcriptional regulator OxyR -
  CEG15_RS11900 (CEG15_11900) - 2597552..2598280 (+) 729 WP_013855882.1 redoxin family protein -

Sequence

Protein


Download         Length: 336 a.a.        Molecular weight: 37450.03 Da        Isoelectric Point: 7.5659

>NTDB_id=236743 CEG15_RS11885 WP_088729180.1 2592820..2593830(-) (pilM) [Vibrio anguillarum strain S3 4/9]
MGKSMVTGIDIGHHSIKAVVLKLAGDSYALVGYKELFITEDIFSDNHTLDYQKIVKKLKELRKGLPLFSHKVAISVPDNA
VISKVLQIDSDLQAREKEFAIYQAFSHQSPFPIEELSLDFVKVMEKSVIRSSTVSYQVYATRKDVVESRALAAQKAGFLP
IAVDVQIHSLLNIWQLASRAQHRSDWMLMDVGHTQTALCIDFTDKAPFHKEIPLGCQWLSQDSAMSGTNAELADKNERFV
HELIERLQRQLQLFTSVNGAGSLAGIWLSGGGADTPMLAQEISRRLKLECEILDPFLLFNNKLARRQRGKQSGQSFSTAA
GLALRGIEWLESSHVA

Nucleotide


Download         Length: 1011 bp        

>NTDB_id=236743 CEG15_RS11885 WP_088729180.1 2592820..2593830(-) (pilM) [Vibrio anguillarum strain S3 4/9]
ATGGGTAAATCAATGGTTACGGGTATAGATATTGGCCACCATAGTATTAAAGCGGTGGTGTTAAAGCTAGCGGGTGATTC
ATATGCACTCGTCGGTTATAAAGAATTATTTATTACTGAGGACATATTCTCCGATAACCACACGCTGGATTATCAGAAAA
TTGTAAAGAAACTCAAAGAACTAAGAAAGGGTTTACCACTATTTAGTCACAAAGTCGCCATATCGGTACCGGACAATGCG
GTAATAAGTAAGGTATTACAGATAGATAGTGACCTGCAGGCGCGTGAAAAAGAGTTTGCTATTTATCAGGCATTTTCTCA
TCAGTCACCGTTCCCGATAGAAGAACTGAGTCTCGATTTCGTCAAAGTGATGGAAAAAAGCGTAATTCGCAGTAGCACCG
TAAGTTATCAAGTTTACGCCACTCGTAAAGACGTCGTGGAAAGCCGTGCGTTAGCGGCTCAAAAAGCGGGCTTTTTACCG
ATCGCGGTTGATGTGCAAATACACAGTTTGTTAAACATTTGGCAGTTGGCGAGCAGGGCACAACATCGCAGCGATTGGAT
GCTCATGGATGTGGGCCATACCCAAACGGCGCTCTGTATTGATTTTACTGATAAAGCCCCTTTTCATAAAGAGATCCCTC
TCGGTTGTCAGTGGTTGTCCCAAGACAGCGCGATGTCGGGCACCAATGCGGAATTAGCCGATAAAAACGAGCGCTTTGTG
CATGAGTTGATCGAGCGACTTCAACGTCAGTTGCAGCTTTTCACCTCCGTCAATGGCGCGGGCAGTTTAGCAGGCATTTG
GCTCTCAGGTGGTGGCGCAGATACTCCGATGTTGGCGCAAGAGATTTCGCGGCGTCTCAAGCTTGAGTGCGAGATTCTCG
ATCCCTTCCTTCTGTTTAACAATAAGTTAGCGAGACGCCAGCGAGGTAAGCAATCTGGGCAGAGTTTTAGCACCGCGGCT
GGCCTTGCACTGCGTGGTATCGAGTGGTTGGAGTCTTCTCATGTTGCATAG

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio cholerae strain A1552

67.16

100

0.676
  pilM Vibrio campbellii strain DS40M4

52.083

100

0.521

Multiple sequence alignment