Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CEG15_RS00235 Genome accession   NZ_CP022099
Coordinates   46126..47235 (+) Length   369 a.a.
NCBI ID   WP_088728520.1    Uniprot ID   -
Organism   Vibrio anguillarum strain S3 4/9     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 41126..52235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEG15_RS00215 (CEG15_00215) rsmB 42042..43322 (-) 1281 WP_088728518.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  CEG15_RS00220 (CEG15_00220) fmt 43382..44329 (-) 948 WP_017043682.1 methionyl-tRNA formyltransferase -
  CEG15_RS00225 (CEG15_00225) def 44346..44855 (-) 510 WP_038148727.1 peptide deformylase -
  CEG15_RS00230 (CEG15_00230) - 44996..46126 (+) 1131 WP_088728519.1 LysM peptidoglycan-binding domain-containing protein -
  CEG15_RS00235 (CEG15_00235) dprA 46126..47235 (+) 1110 WP_088728520.1 DNA-processing protein DprA Machinery gene
  CEG15_RS00240 (CEG15_00240) - 47238..47714 (+) 477 WP_064624061.1 DUF494 family protein -
  CEG15_RS00245 (CEG15_00245) - 47742..48314 (+) 573 WP_194574929.1 type I DNA topoisomerase -
  CEG15_RS00250 (CEG15_00250) - 48387..49526 (-) 1140 WP_088720695.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  CEG15_RS00255 (CEG15_00255) purE 49531..50016 (-) 486 WP_010319910.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  CEG15_RS00260 (CEG15_00260) - 50217..50774 (+) 558 WP_017043689.1 L-threonylcarbamoyladenylate synthase -
  CEG15_RS00265 (CEG15_00265) hemF 50795..51709 (+) 915 WP_010319908.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39835.58 Da        Isoelectric Point: 6.7183

>NTDB_id=236706 CEG15_RS00235 WP_088728520.1 46126..47235(+) (dprA) [Vibrio anguillarum strain S3 4/9]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQEQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIATAPPVLFVKGRITALSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSAQSDQQLPFAELLA
NVGVEATPVDILASRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=236706 CEG15_RS00235 WP_088728520.1 46126..47235(+) (dprA) [Vibrio anguillarum strain S3 4/9]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGTCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCCGCGTTGGGTCTAGTTCAAGAGCAAATCC
GTTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCATATCCTT
ACTCCATTTTGCGATGGTTATCCTTCTTTACTAAAAGAAATTGCTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGCACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTCACCAGTGGTTTGGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGGCCAGATAATTTTCCGC
GGCGAAATCGTATTATCAGCGGGTTAGCGGTTGGTGTTTTAGTGGTGGAAGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCTCGCTATGCGGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCCATTGCTAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATCGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCGGATTTATTTTCAGCTCAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCCATATACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAACTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAGGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DprA winged helix domain (DprA_WH)

(312-362)

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.481

99.187

0.64
  dprA Vibrio cholerae strain A1552

61.725

100

0.621
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.802

98.374

0.431
  dprA Neisseria meningitidis strain C311

37.722

100

0.404
  dprA Neisseria meningitidis MC58

37.722

100

0.404
  dprA Acinetobacter baumannii D1279779

40.51

95.664

0.388
  dprA Neisseria gonorrhoeae MS11

36.132

100

0.385
  dprA Neisseria gonorrhoeae strain FA1090

35.878

100

0.382
  dprA Acinetobacter baumannii strain A118

39.943

95.664

0.382
  dprA Haemophilus influenzae Rd KW20

50.365

74.255

0.374
  dprA Acinetobacter baylyi ADP1

40.181

89.702

0.36

Multiple sequence alignment