Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   C6Y56_RS00095 Genome accession   NZ_CP027561
Coordinates   20696..21796 (+) Length   366 a.a.
NCBI ID   WP_169428225.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain G7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 15696..26796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS00075 (C6Y56_00075) rsmB 16591..17901 (-) 1311 WP_169428223.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C6Y56_RS00080 (C6Y56_00080) fmt 17898..18857 (-) 960 WP_169428224.1 methionyl-tRNA formyltransferase -
  C6Y56_RS00085 (C6Y56_00085) def 18915..19421 (-) 507 WP_039764933.1 peptide deformylase -
  C6Y56_RS00090 (C6Y56_00090) tsaP 19591..20616 (+) 1026 WP_007954103.1 LysM domain-containing protein Machinery gene
  C6Y56_RS00095 (C6Y56_00095) dprA 20696..21796 (+) 1101 WP_169428225.1 DNA-processing protein DprA Machinery gene
  C6Y56_RS00100 (C6Y56_00100) - 21851..22408 (+) 558 WP_169428226.1 L-threonylcarbamoyladenylate synthase -
  C6Y56_RS00105 (C6Y56_00105) - 22458..23435 (-) 978 WP_169428227.1 quinone oxidoreductase -
  C6Y56_RS00110 (C6Y56_00110) hemF 23589..24503 (+) 915 WP_169428228.1 oxygen-dependent coproporphyrinogen oxidase -
  C6Y56_RS00115 (C6Y56_00115) aroE 24513..25334 (+) 822 WP_169428229.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 39019.95 Da        Isoelectric Point: 7.8173

>NTDB_id=235785 C6Y56_RS00095 WP_169428225.1 20696..21796(+) (dprA) [Pseudomonas fluorescens strain G7]
MMMPVSPSVSPAELEARLRLHRLPEIGPKRFTKLLEAFGCASKAISAPASAWRSLGLPAACAEARRCPEVRDGASHALRW
LERPEQHLLMWDHPDYPALLAQIPDPPPLLFVAGDPRILEKPQLAMVGSRRASRPGMDTATAFSRSLAGAGFVITSGLAL
GIDAAVHQGALDVGGQTVGVLGTGLEKFYPQRNRRLADTMIASGSALISEFPLDAGPTASNFPRRNRIISGLSLGVLVVE
ASVASGSLITARLAAEQGREVYAIPGSIHHPGARGCHQLIRDGAVLVETIEHILEALRGWQHLPVSSVAVNPDNPLLRLL
HAAPHTSEGLADSSGWALPKVLAALTELEMEGRAVCENGRWFARVS

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=235785 C6Y56_RS00095 WP_169428225.1 20696..21796(+) (dprA) [Pseudomonas fluorescens strain G7]
ATGATGATGCCTGTCTCTCCATCGGTTTCGCCGGCGGAGCTCGAAGCGCGCCTGCGCCTGCACCGCTTGCCGGAAATCGG
TCCCAAGCGTTTCACCAAACTGCTCGAAGCCTTCGGCTGTGCCTCGAAGGCAATCAGCGCGCCCGCCAGCGCCTGGCGCT
CGCTGGGTTTGCCGGCGGCTTGTGCCGAGGCCCGCCGCTGCCCTGAAGTTCGCGACGGCGCCAGCCACGCATTGCGCTGG
CTAGAGCGGCCGGAGCAACATTTGTTGATGTGGGATCACCCGGATTACCCGGCTTTGCTGGCGCAGATTCCCGACCCGCC
ACCCTTGCTGTTCGTCGCTGGCGACCCACGGATCCTGGAAAAACCGCAACTGGCGATGGTCGGCAGTCGCCGCGCTTCGC
GACCGGGCATGGACACCGCCACGGCATTTTCCCGCAGTCTGGCCGGAGCCGGTTTTGTCATCACCAGTGGCCTGGCGCTG
GGCATCGATGCCGCCGTGCACCAAGGCGCGCTCGACGTTGGCGGGCAAACCGTGGGTGTGCTGGGCACCGGTCTGGAAAA
ATTTTATCCACAGCGCAACCGGCGGCTGGCGGACACGATGATTGCCTCGGGCAGTGCGTTGATTTCGGAGTTTCCACTGG
ACGCCGGGCCGACGGCGAGCAACTTCCCCAGGCGCAACCGGATCATCAGCGGCTTGTCACTCGGCGTACTGGTGGTCGAG
GCCAGTGTTGCCAGCGGTTCGCTGATCACCGCGCGGCTGGCGGCGGAACAGGGTCGCGAGGTGTACGCCATTCCGGGTTC
GATCCATCACCCCGGCGCCCGGGGTTGTCATCAGTTGATCCGTGATGGAGCGGTGCTGGTGGAAACCATCGAGCACATTC
TCGAAGCCTTGCGTGGCTGGCAGCATCTGCCGGTATCCAGCGTCGCAGTGAATCCAGATAACCCGTTGCTGCGTCTGCTA
CACGCGGCGCCGCACACCAGCGAAGGCCTGGCCGACAGCAGTGGCTGGGCGTTGCCAAAAGTACTGGCGGCATTGACCGA
ACTGGAGATGGAGGGCCGCGCCGTGTGCGAAAACGGCCGCTGGTTTGCGCGGGTAAGCTAG

Domains

Predicted by InterProScan.

DprA winged helix domain (WHD_DprA)

(315-359)

DNA recombination-mediator protein A (DNA_processg_A)

(81-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

42.975

99.18

0.426
  dprA Legionella pneumophila strain ERS1305867

42.697

97.268

0.415
  dprA Acinetobacter baylyi ADP1

40.563

96.995

0.393
  dprA Neisseria meningitidis MC58

45.631

84.426

0.385
  dprA Neisseria meningitidis strain C311

45.631

84.426

0.385
  dprA Neisseria gonorrhoeae strain FA1090

45.902

83.333

0.383
  dprA Neisseria gonorrhoeae MS11

45.574

83.333

0.38
  dprA Glaesserella parasuis strain SC1401

45.183

82.24

0.372
  dprA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

37.921

97.268

0.369
  dprA Haemophilus influenzae Rd KW20

45.27

80.874

0.366
  dprA Vibrio cholerae O1 biovar El Tor strain E7946

44.932

80.874

0.363
  dprA Vibrio cholerae strain A1552

44.932

80.874

0.363