Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   C6Y56_RS00090 Genome accession   NZ_CP027561
Coordinates   19591..20616 (+) Length   341 a.a.
NCBI ID   WP_007954103.1    Uniprot ID   A0ABY3Q2A6
Organism   Pseudomonas fluorescens strain G7     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 14591..25616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C6Y56_RS00065 (C6Y56_00065) - 14857..15171 (-) 315 WP_169428222.1 tetratricopeptide repeat protein -
  C6Y56_RS00070 (C6Y56_00070) trkA 15192..16568 (-) 1377 WP_085713086.1 Trk system potassium transporter TrkA -
  C6Y56_RS00075 (C6Y56_00075) rsmB 16591..17901 (-) 1311 WP_169428223.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  C6Y56_RS00080 (C6Y56_00080) fmt 17898..18857 (-) 960 WP_169428224.1 methionyl-tRNA formyltransferase -
  C6Y56_RS00085 (C6Y56_00085) def 18915..19421 (-) 507 WP_039764933.1 peptide deformylase -
  C6Y56_RS00090 (C6Y56_00090) tsaP 19591..20616 (+) 1026 WP_007954103.1 LysM domain-containing protein Machinery gene
  C6Y56_RS00095 (C6Y56_00095) dprA 20696..21796 (+) 1101 WP_169428225.1 DNA-processing protein DprA Machinery gene
  C6Y56_RS00100 (C6Y56_00100) - 21851..22408 (+) 558 WP_169428226.1 L-threonylcarbamoyladenylate synthase -
  C6Y56_RS00105 (C6Y56_00105) - 22458..23435 (-) 978 WP_169428227.1 quinone oxidoreductase -
  C6Y56_RS00110 (C6Y56_00110) hemF 23589..24503 (+) 915 WP_169428228.1 oxygen-dependent coproporphyrinogen oxidase -
  C6Y56_RS00115 (C6Y56_00115) aroE 24513..25334 (+) 822 WP_169428229.1 shikimate dehydrogenase -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37447.72 Da        Isoelectric Point: 9.0614

>NTDB_id=235784 C6Y56_RS00090 WP_007954103.1 19591..20616(+) (tsaP) [Pseudomonas fluorescens strain G7]
MRKSLLALLFLASAGAAHGQVQLKEGFPQQYTVVSGDTLWDISGKYLREPWQWPQLWRANPQIENPNLIYPGDTLTLSYV
NGQPRLTVNRGESRGTIKLSPRIRTSPVAEAIPSIPLKSINSFLLSNRIVDKVEDFDKAPYIVAGDAERVLSGTGDRIFA
RGHFDPNQPVYGIFRQGKVYTDPQSKEFLGINADDIGGGEIVATEGDVATLALQRTTQEVRLGDRLFSGEERSINSTFMP
SAPTTDINGLIIDVPRGVTQIGAMDVVTLNKGKRDGLAEGNVLVVMKTGETVRDRITGQPLKIPDERAGLLMVFRTYDKL
SYGLVLNASRSLAVLDKVRNP

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=235784 C6Y56_RS00090 WP_007954103.1 19591..20616(+) (tsaP) [Pseudomonas fluorescens strain G7]
ATGAGGAAATCACTACTCGCCCTGCTGTTTCTGGCCTCGGCCGGCGCTGCGCACGGGCAAGTGCAACTCAAGGAAGGTTT
TCCACAGCAATACACGGTGGTTTCGGGGGATACGCTCTGGGACATCTCCGGTAAATATTTGCGCGAACCCTGGCAGTGGC
CACAGCTGTGGCGGGCCAATCCGCAGATCGAAAACCCCAACCTTATCTACCCCGGCGACACGCTCACGCTCAGTTACGTC
AACGGCCAGCCGCGCCTGACCGTCAATCGCGGCGAGTCGCGCGGCACCATCAAGCTGTCGCCACGCATCCGTACCAGTCC
GGTAGCGGAGGCGATTCCGAGCATTCCGCTCAAATCCATCAACAGCTTTCTGCTGAGCAACCGCATCGTCGACAAGGTCG
AGGACTTCGACAAGGCGCCGTACATCGTCGCCGGCGATGCCGAGCGGGTGCTCAGCGGCACCGGCGACCGGATCTTTGCT
CGCGGGCATTTCGACCCGAACCAGCCGGTCTACGGCATCTTCCGCCAGGGCAAGGTCTACACCGATCCGCAGAGCAAGGA
GTTTCTGGGGATCAACGCCGACGATATCGGCGGCGGTGAAATCGTCGCCACCGAAGGCGACGTCGCTACCCTCGCCCTGC
AACGCACCACACAGGAAGTGCGCCTCGGCGACCGTCTGTTCAGTGGCGAAGAGCGTTCGATCAACTCGACGTTCATGCCC
AGCGCTCCCACCACCGACATCAATGGCCTGATCATCGACGTGCCACGCGGCGTCACGCAGATCGGCGCGATGGATGTAGT
GACATTGAACAAGGGCAAGCGCGACGGTCTGGCCGAAGGCAACGTACTGGTGGTGATGAAAACCGGGGAAACCGTGCGTG
ACCGGATCACCGGCCAGCCGCTGAAAATCCCCGACGAGCGCGCCGGATTGCTGATGGTGTTCCGCACCTACGACAAGCTC
AGTTATGGCCTGGTGTTGAACGCATCGCGCTCGCTGGCGGTGCTGGACAAGGTGCGAAATCCTTAG

Domains

Predicted by InterProScan.

LysM domain (LysM)

(31-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

33.88

100

0.364