Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CD200_RS19350 Genome accession   NZ_CP021970
Coordinates   3699280..3699627 (-) Length   115 a.a.
NCBI ID   WP_061565986.1    Uniprot ID   A0A8B5YAR4
Organism   Bacillus licheniformis strain CBA7132     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3694280..3704627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CD200_RS19320 (CD200_19375) srlD 3694890..3695675 (-) 786 WP_003185881.1 sorbitol-6-phosphate dehydrogenase -
  CD200_RS19325 (CD200_19380) - 3695690..3696061 (-) 372 WP_003185882.1 PTS glucitol/sorbitol transporter subunit IIA -
  CD200_RS19330 (CD200_19385) - 3696086..3697093 (-) 1008 WP_003185884.1 PTS glucitol/sorbitol transporter subunit IIB -
  CD200_RS19335 (CD200_19390) - 3697111..3697659 (-) 549 WP_061565985.1 PTS glucitol/sorbitol transporter subunit IIC -
  CD200_RS19340 (CD200_19395) - 3697656..3698099 (-) 444 WP_003185888.1 transcriptional regulator GutM -
  CD200_RS19345 (CD200_19400) - 3698096..3699058 (-) 963 WP_003185891.1 sugar-binding transcriptional regulator -
  CD200_RS19350 (CD200_19405) ssbB 3699280..3699627 (-) 348 WP_061565986.1 single-stranded DNA-binding protein Machinery gene
  CD200_RS19355 (CD200_19410) - 3699733..3700104 (-) 372 WP_003185895.1 hypothetical protein -
  CD200_RS19360 (CD200_19415) - 3700286..3700699 (+) 414 WP_003185898.1 YwpF-like family protein -
  CD200_RS19365 (CD200_19420) mscL 3700740..3701120 (-) 381 WP_061565987.1 large conductance mechanosensitive channel protein MscL -
  CD200_RS19370 (CD200_19425) fabZ 3701190..3701624 (-) 435 WP_003185902.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CD200_RS19375 (CD200_19430) - 3701818..3702645 (-) 828 WP_003185904.1 flagellar hook-basal body protein -
  CD200_RS19380 (CD200_19435) - 3702689..3703528 (-) 840 WP_003185907.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12767.47 Da        Isoelectric Point: 6.9538

>NTDB_id=235374 CD200_RS19350 WP_061565986.1 3699280..3699627(-) (ssbB) [Bacillus licheniformis strain CBA7132]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEVEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERTFITEVVARTVRFLGESRKAHEPADA

Nucleotide


Download         Length: 348 bp        

>NTDB_id=235374 CD200_RS19350 WP_061565986.1 3699280..3699627(-) (ssbB) [Bacillus licheniformis strain CBA7132]
ATGTTTAATGAGATCATGCTCGTCGGGCGTTTGACAAAAGATCCCGAACTGCGGTATACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAGAACGCAGCAGGCGAAGTAGAAGCGGACTTTGTCAATTGCACTCTAT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACCCGC
CAATACGTCAATTCAGAAGGCGAACGCACCTTTATTACAGAAGTTGTCGCCCGGACAGTCAGATTTTTGGGAGAAAGCCG
GAAAGCGCATGAGCCGGCTGATGCTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B5YAR4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

71.845

89.565

0.643
  ssbA Bacillus subtilis subsp. subtilis str. 168

58.252

89.565

0.522
  ssb Latilactobacillus sakei subsp. sakei 23K

51.351

96.522

0.496
  ssbA Streptococcus mutans UA159

44.86

93.043

0.417
  ssbB/cilA Streptococcus mitis NCTC 12261

42.991

93.043

0.4
  ssbB Streptococcus sobrinus strain NIDR 6715-7

42.991

93.043

0.4
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.991

93.043

0.4
  ssbB Lactococcus lactis subsp. cremoris KW2

43.396

92.174

0.4
  ssbB/cilA Streptococcus mitis SK321

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae Rx1

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae D39

42.056

93.043

0.391
  ssbB/cilA Streptococcus pneumoniae R6

42.056

93.043

0.391

Multiple sequence alignment