Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | CDO84_RS17680 | Genome accession | NZ_CP021911 |
| Coordinates | 3500871..3501212 (-) | Length | 113 a.a. |
| NCBI ID | WP_014665657.1 | Uniprot ID | - |
| Organism | Bacillus sp. MD-5 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3495871..3506212
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CDO84_RS17665 (CDO84_17665) | - | 3496116..3498884 (+) | 2769 | WP_040081587.1 | DEAD/DEAH box helicase | - |
| CDO84_RS17670 (CDO84_17670) | ywpJ | 3499009..3499866 (-) | 858 | WP_014665655.1 | phosphatase YwpJ | - |
| CDO84_RS17675 (CDO84_17675) | glcR | 3499872..3500648 (-) | 777 | WP_040081586.1 | transcriptional regulator GlcR | - |
| CDO84_RS17680 (CDO84_17680) | ssbB | 3500871..3501212 (-) | 342 | WP_014665657.1 | single-stranded DNA-binding protein SsbB | Machinery gene |
| CDO84_RS17685 (CDO84_17685) | ywpG | 3501289..3501672 (-) | 384 | WP_040081585.1 | DynA interaction protein YwpG | - |
| CDO84_RS17690 (CDO84_17690) | - | 3501847..3502257 (+) | 411 | WP_014665659.1 | YwpF-like family protein | - |
| CDO84_RS17695 (CDO84_17695) | - | 3502315..3502953 (-) | 639 | WP_040081584.1 | class A sortase | - |
Sequence
Protein
Download Length: 113 a.a. Molecular weight: 12476.14 Da Isoelectric Point: 7.8150
>NTDB_id=234832 CDO84_RS17680 WP_014665657.1 3500871..3501212(-) (ssbB) [Bacillus sp. MD-5]
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
MFNQVMLVGRLTKDPELRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD
Nucleotide
Download Length: 342 bp
>NTDB_id=234832 CDO84_RS17680 WP_014665657.1 3500871..3501212(-) (ssbB) [Bacillus sp. MD-5]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTATACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCCGAGCTTCGCTATACTTCCGCCGGTGCGGCAGTCGC
CCACGTTACGCTCGCGGTGAACCGCAGCTTCAAAAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAGACAGCTGAAAACACCGCGTTGTATTGCCAAAAAGGTTCTCTTGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCAGAAGGGGTTAACGTGTATGTAACAGAAGTATTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
98.23 |
100 |
0.982 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
65.094 |
93.805 |
0.611 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
58.491 |
93.805 |
0.549 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.17 |
93.805 |
0.442 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.37 |
95.575 |
0.434 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.37 |
95.575 |
0.434 |
| ssbA | Streptococcus mutans UA159 |
45.283 |
93.805 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.444 |
95.575 |
0.425 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.444 |
95.575 |
0.425 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
42.857 |
92.92 |
0.398 |