Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BJE04_RS15630 Genome accession   NC_005139
Coordinates   3313130..3314233 (-) Length   367 a.a.
NCBI ID   WP_011151421.1    Uniprot ID   Q7MGK8
Organism   Vibrio vulnificus YJ016     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3308130..3319233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BJE04_RS15600 (VV_RS15610) - 3308189..3308746 (-) 558 WP_013570891.1 L-threonylcarbamoyladenylate synthase -
  BJE04_RS15605 (VV3218) purE 3308927..3309412 (+) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  BJE04_RS15610 (VV3219) - 3309416..3310549 (+) 1134 WP_011151419.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  BJE04_RS15615 (VV3220) - 3310605..3311942 (-) 1338 WP_011149570.1 IS4-like element ISVvu3 family transposase -
  BJE04_RS15620 (VV3221) - 3312055..3312624 (-) 570 WP_043877351.1 type I DNA topoisomerase -
  BJE04_RS15625 (VV3222) - 3312648..3313127 (-) 480 WP_011079084.1 DUF494 family protein -
  BJE04_RS15630 (VV3223) dprA 3313130..3314233 (-) 1104 WP_011151421.1 DNA-processing protein DprA Machinery gene
  BJE04_RS15635 (VV3224) - 3314233..3315330 (-) 1098 WP_011079082.1 LysM peptidoglycan-binding domain-containing protein -
  BJE04_RS15640 (VV3225) def 3315469..3315981 (+) 513 WP_011079081.1 peptide deformylase -
  BJE04_RS15645 (VV3226) fmt 3316013..3316960 (+) 948 WP_011151423.1 methionyl-tRNA formyltransferase -
  BJE04_RS15650 (VV3227) rsmB 3317044..3318324 (+) 1281 WP_011151424.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39523.09 Da        Isoelectric Point: 6.7779

>NTDB_id=23160 BJE04_RS15630 WP_011151421.1 3313130..3314233(-) (dprA) [Vibrio vulnificus YJ016]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMEGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALTAGGETVAVLGSGFQHIYPARHKGLAARICQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPLLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=23160 BJE04_RS15630 WP_011151421.1 3313130..3314233(-) (dprA) [Vibrio vulnificus YJ016]
ATGAGTCAGGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTACTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTCTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCTATATCCGCCGCTGCTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAGGGTGATCC
TCATTGTTTAACTAAGCCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGGAAGGGTTGCAACATGCCCGCGACT
TTGCGGCTCAACTGGTCCAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGC
GCGCTGACAGCGGGGGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTTCAACATATTTATCCCGCTCGCCATAAAGGCCT
TGCCGCGAGAATTTGTCAGCAAGGTGCGCTGGTTTCGGAGTTCCGTCCGAATACGAAAGCCAAAGCCGAACATTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGTGTTTTGGTGGTCGAAGCCGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGCCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAATGCACGTGGCGGAAA
CTTGCTGATAAAAAGCGGAGCCTGTTTGGTCACTGGGGTAGAAGATGTGCTGAGTGAAGTGCAAACCTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCTGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTTTCAGGGCATGTTGTTGCTGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(316-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MGK8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.421

98.91

0.687
  dprA Vibrio cholerae strain A1552

58.491

100

0.591
  dprA Glaesserella parasuis strain SC1401

44.744

100

0.452
  dprA Legionella pneumophila strain ERS1305867

44.321

98.365

0.436
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.531

100

0.406
  dprA Neisseria meningitidis strain C311

37.531

100

0.406
  dprA Neisseria gonorrhoeae strain FA1090

36.962

100

0.398
  dprA Neisseria gonorrhoeae MS11

36.709

100

0.395
  dprA Acinetobacter baylyi ADP1

37.466

100

0.379
  dprA Acinetobacter baumannii strain A118

41.692

90.191

0.376
  dprA Acinetobacter baumannii D1279779

41.088

90.191

0.371

Multiple sequence alignment