Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   S101359_RS18185 Genome accession   NZ_CP021500
Coordinates   3670748..3671089 (-) Length   113 a.a.
NCBI ID   WP_061570877.1    Uniprot ID   -
Organism   Bacillus atrophaeus strain SRCM101359     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3665748..3676089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  S101359_RS18170 (S101359_03596) - 3665987..3668761 (+) 2775 WP_088118122.1 DEAD/DEAH box helicase -
  S101359_RS18175 (S101359_03597) - 3668884..3669741 (-) 858 WP_088118123.1 Cof-type HAD-IIB family hydrolase -
  S101359_RS18180 (S101359_03598) - 3669747..3670523 (-) 777 WP_061570962.1 DeoR/GlpR family DNA-binding transcription regulator -
  S101359_RS18185 (S101359_03599) ssbB 3670748..3671089 (-) 342 WP_061570877.1 single-stranded DNA-binding protein SsbB Machinery gene
  S101359_RS18190 (S101359_03600) - 3671167..3671550 (-) 384 WP_088118124.1 hypothetical protein -
  S101359_RS18195 (S101359_03601) - 3671725..3672135 (+) 411 WP_061570879.1 YwpF-like family protein -
  S101359_RS18200 (S101359_03602) - 3672409..3673068 (-) 660 WP_088118125.1 class A sortase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12530.24 Da        Isoelectric Point: 8.4667

>NTDB_id=231324 S101359_RS18185 WP_061570877.1 3670748..3671089(-) (ssbB) [Bacillus atrophaeus strain SRCM101359]
MFNQVMLVGRLTKDPELRYTSAGAAVTHITIAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGISGRIQTR
SYENAEGVKVYVTEVMADTVRFMDSKAREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=231324 S101359_RS18185 WP_061570877.1 3670748..3671089(-) (ssbB) [Bacillus atrophaeus strain SRCM101359]
TTGTTCAATCAGGTCATGCTTGTCGGACGTTTAACAAAAGACCCTGAGCTTCGGTACACTTCCGCAGGCGCGGCAGTCAC
ACACATTACAATCGCGGTAAACCGCAGCTTCAAAAATGCTTCAGGAGAAATTGAAGCAGATTATGTCAATTGCACGCTTT
GGAGAAAAACGGCCGAAAACACGGCGTTATATTGCCAAAAAGGCTCTCTCGTCGGCATAAGCGGACGGATTCAGACAAGG
AGCTATGAAAATGCGGAAGGTGTCAAAGTGTACGTAACTGAAGTGATGGCTGACACTGTTCGTTTTATGGATTCTAAAGC
CCGGGAAAAAGCTGCCGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

91.15

100

0.912
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.321

93.805

0.575
  ssb Latilactobacillus sakei subsp. sakei 23K

58.491

93.805

0.549
  ssbB Streptococcus sobrinus strain NIDR 6715-7

48.148

95.575

0.46
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.37

95.575

0.434
  ssbB/cilA Streptococcus mitis NCTC 12261

45.37

95.575

0.434
  ssbA Streptococcus mutans UA159

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae D39

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae R6

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis SK321

44.444

95.575

0.425
  ssbB Lactococcus lactis subsp. cremoris KW2

41.509

93.805

0.389

Multiple sequence alignment