Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC/cglC   Type   Machinery gene
Locus tag   EF_RS09765 Genome accession   NC_004668
Coordinates   1962953..1963228 (-) Length   91 a.a.
NCBI ID   WP_002356991.1    Uniprot ID   A0A1B4XPV0
Organism   Enterococcus faecalis V583     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1920604..1981335 1962953..1963228 within 0


Gene organization within MGE regions


Location: 1920604..1981335
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EF_RS09480 (EF1985) comGG 1921518..1921871 (-) 354 WP_002357061.1 competence type IV pilus minor pilin ComGG -
  EF_RS09485 (EF1986) comGF 1921871..1922305 (-) 435 WP_002357060.1 competence type IV pilus minor pilin ComGF -
  EF_RS09490 (EF1987) - 1922295..1922696 (-) 402 WP_002383134.1 type II secretion system protein -
  EF_RS16950 (EF1988) - 1923000..1923125 (+) 126 WP_002364184.1 hypothetical protein -
  EF_RS09495 (EF1989) hemH 1923422..1924363 (-) 942 WP_002364185.1 ferrochelatase -
  EF_RS09505 (EF1990) - 1925103..1925351 (-) 249 WP_002383136.1 hypothetical protein -
  EF_RS09510 (EF1991) - 1925423..1925623 (-) 201 WP_002357053.1 cold-shock protein -
  EF_RS09515 (EF1992) - 1926460..1927701 (-) 1242 WP_002370962.1 LysM peptidoglycan-binding domain-containing protein -
  EF_RS09520 (EF1993) - 1927702..1927935 (-) 234 WP_002384371.1 phage holin -
  EF_RS09525 - 1927928..1928149 (-) 222 WP_002364191.1 hypothetical protein -
  EF_RS09530 (EF1994) - 1928184..1928339 (-) 156 WP_002364192.1 XkdX family protein -
  EF_RS09535 (EF1995) - 1928341..1928661 (-) 321 WP_002389262.1 hypothetical protein -
  EF_RS09540 (EF1996) - 1928675..1929166 (-) 492 WP_002364194.1 hypothetical protein -
  EF_RS09545 - 1929166..1929453 (-) 288 WP_002357046.1 collagen-like protein -
  EF_RS09550 (EF1998) - 1929450..1930046 (-) 597 WP_002357045.1 hypothetical protein -
  EF_RS09555 (EF2000) - 1930039..1930921 (-) 883 Protein_1879 phage baseplate upper protein -
  EF_RS09560 (EF2001) - 1930940..1933747 (-) 2808 WP_002387289.1 phage tail spike protein -
  EF_RS09565 (EF2002) - 1933729..1934463 (-) 735 WP_011109514.1 tail protein -
  EF_RS09570 (EF2003) - 1934453..1937350 (-) 2898 WP_002387288.1 tape measure protein -
  EF_RS09575 (EF2004) - 1937598..1937948 (-) 351 WP_002357039.1 phage tail assembly chaperone G -
  EF_RS09580 (EF2005) - 1938001..1938849 (-) 849 WP_002387287.1 major tail protein -
  EF_RS09585 (EF2006) - 1938850..1939224 (-) 375 WP_002387286.1 phage tail terminator family protein -
  EF_RS09590 (EF2007) - 1939227..1939625 (-) 399 WP_002357036.1 HK97 gp10 family phage protein -
  EF_RS09595 (EF2008) - 1939618..1939992 (-) 375 WP_002387285.1 hypothetical protein -
  EF_RS09600 (EF2009) - 1939989..1940333 (-) 345 WP_002387282.1 hypothetical protein -
  EF_RS09605 (EF2010) - 1940347..1940529 (-) 183 WP_002387281.1 hypothetical protein -
  EF_RS09610 (EF2011) - 1940558..1941445 (-) 888 WP_002387280.1 DUF5309 domain-containing protein -
  EF_RS09615 (EF2012) - 1941459..1942082 (-) 624 WP_010706493.1 DUF4355 domain-containing protein -
  EF_RS09620 (EF2013) - 1942301..1942621 (-) 321 WP_002380436.1 hypothetical protein -
  EF_RS09625 (EF2014) - 1942678..1942908 (-) 231 WP_002380437.1 hypothetical protein -
  EF_RS09630 (EF2015) - 1942909..1944813 (-) 1905 WP_010706494.1 head protein -
  EF_RS09635 (EF2016) - 1944788..1946260 (-) 1473 WP_010706495.1 phage portal protein -
  EF_RS09640 (EF2017) terL 1946272..1947660 (-) 1389 WP_002387276.1 phage terminase large subunit -
  EF_RS09645 (EF2018) - 1947653..1948114 (-) 462 WP_002383816.1 helix-turn-helix domain-containing protein -
  EF_RS09650 (EF2019) - 1948190..1948366 (-) 177 WP_010706496.1 hypothetical protein -
  EF_RS09655 (EF2020) - 1948550..1949362 (-) 813 WP_002383813.1 hypothetical protein -
  EF_RS16590 (EF2021) - 1949474..1949707 (-) 234 Protein_1900 hypothetical protein -
  EF_RS09660 - 1950515..1950760 (-) 246 WP_010716537.1 hypothetical protein -
  EF_RS09665 (EF2022) - 1950785..1951708 (-) 924 WP_002383810.1 DUF6731 family protein -
  EF_RS09675 (EF2024) - 1952426..1952842 (-) 417 WP_010706497.1 ArpU family phage packaging/lysis transcriptional regulator -
  EF_RS09680 (EF2026) - 1953750..1954158 (-) 409 Protein_1904 RusA family crossover junction endodeoxyribonuclease -
  EF_RS09685 (EF2027) - 1954155..1955012 (-) 858 WP_002387271.1 helix-turn-helix domain-containing protein -
  EF_RS09690 (EF2028) - 1955012..1955212 (-) 201 WP_002357010.1 hypothetical protein -
  EF_RS16815 - 1955217..1955600 (-) 384 WP_002383802.1 putative HNHc nuclease -
  EF_RS16820 - 1955639..1955857 (-) 219 WP_010774222.1 hypothetical protein -
  EF_RS09700 (EF2031) - 1955862..1956596 (-) 735 WP_002383799.1 ERF family protein -
  EF_RS09705 (EF2032) - 1956589..1956906 (-) 318 WP_002383798.1 hypothetical protein -
  EF_RS09710 (EF2034) - 1957102..1957440 (-) 339 WP_002383796.1 hypothetical protein -
  EF_RS09715 - 1957477..1957686 (-) 210 WP_002378465.1 hypothetical protein -
  EF_RS09720 (EF2036) - 1957741..1957929 (+) 189 WP_002357001.1 YegP family protein -
  EF_RS09725 (EF2037) - 1957955..1958677 (-) 723 WP_002387270.1 Rha family transcriptional regulator -
  EF_RS09730 (EF2038) - 1958700..1959011 (-) 312 WP_002403885.1 hypothetical protein -
  EF_RS09735 (EF2039) - 1959023..1959214 (-) 192 WP_002383936.1 hypothetical protein -
  EF_RS09740 (EF2040) - 1959510..1959851 (+) 342 WP_002387267.1 helix-turn-helix domain-containing protein -
  EF_RS09745 (EF2041) - 1959856..1960506 (+) 651 WP_002387266.1 ImmA/IrrE family metallo-endopeptidase -
  EF_RS09750 (EF2042) - 1960602..1961231 (+) 630 WP_002387265.1 SHOCT domain-containing protein -
  EF_RS09755 (EF2043) - 1961337..1962485 (+) 1149 WP_002387264.1 tyrosine-type recombinase/integrase -
  EF_RS09760 comGD 1962522..1962956 (-) 435 Protein_1921 competence type IV pilus minor pilin ComGD -
  EF_RS09765 (EF2044) comGC/cglC 1962953..1963228 (-) 276 WP_002356991.1 competence type IV pilus major pilin ComGC Machinery gene
  EF_RS09770 (EF2045) comGB 1963228..1964274 (-) 1047 WP_002356990.1 competence type IV pilus assembly protein ComGB -
  EF_RS09775 (EF2046) comGA 1964231..1965199 (-) 969 WP_002364362.1 competence type IV pilus ATPase ComGA -
  EF_RS09780 (EF2047) - 1965440..1966768 (-) 1329 WP_002362058.1 APC family permease -
  EF_RS09785 (EF2048) rlmN 1967059..1968132 (-) 1074 WP_002356987.1 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN -
  EF_RS09790 (EF2049) - 1968257..1970086 (-) 1830 WP_002383725.1 ABC transporter permease -
  EF_RS09795 (EF2050) - 1970076..1970825 (-) 750 WP_002381711.1 ABC transporter ATP-binding protein -
  EF_RS09800 (EF2051) - 1970943..1971644 (-) 702 WP_002364244.1 GntR family transcriptional regulator -
  EF_RS09805 (EF2052) - 1971775..1974198 (-) 2424 WP_002364367.1 DNA translocase FtsK -
  EF_RS09810 (EF2055) - 1974512..1975723 (-) 1212 WP_002360017.1 NAD(P)/FAD-dependent oxidoreductase -
  EF_RS09815 (EF2056) - 1975752..1976657 (-) 906 WP_002360016.1 prenyltransferase -
  EF_RS09820 (EF2057) - 1976779..1977759 (+) 981 WP_002360015.1 polyprenyl synthetase family protein -
  EF_RS09825 (EF2058) cydC 1977839..1979605 (-) 1767 WP_002383727.1 thiol reductant ABC exporter subunit CydC -
  EF_RS09830 (EF2059) cydD 1979602..1981335 (-) 1734 WP_002378477.1 thiol reductant ABC exporter subunit CydD -

Sequence

Protein


Download         Length: 91 a.a.        Molecular weight: 10464.41 Da        Isoelectric Point: 9.3192

>NTDB_id=22886 EF_RS09765 WP_002356991.1 1962953..1963228(-) (comGC/cglC) [Enterococcus faecalis V583]
MKKKQKYAGFTLLEMLIVLLIISVLILLFVPNLAKHKETVDKKGNEAIVKIVESQIELYTLEKNKTPSLNELVNEGYITK
EQLDKYTAEKQ

Nucleotide


Download         Length: 276 bp        

>NTDB_id=22886 EF_RS09765 WP_002356991.1 1962953..1963228(-) (comGC/cglC) [Enterococcus faecalis V583]
ATGAAAAAGAAACAAAAATACGCAGGGTTTACATTATTAGAAATGTTGATTGTCTTATTGATTATTTCCGTATTGATTTT
ACTTTTTGTCCCTAACTTAGCGAAACATAAAGAAACAGTTGATAAAAAAGGCAATGAAGCAATCGTAAAAATTGTAGAAT
CACAAATCGAGCTCTACACACTAGAAAAAAATAAGACGCCTTCCTTAAATGAATTAGTCAACGAAGGCTACATTACTAAA
GAGCAGTTAGATAAATATACAGCAGAAAAGCAATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-28)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1B4XPV0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC/cglC Streptococcus pneumoniae Rx1

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae D39

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae R6

63.095

92.308

0.582
  comGC/cglC Streptococcus pneumoniae TIGR4

63.095

92.308

0.582
  comGC/cglC Streptococcus mitis NCTC 12261

61.905

92.308

0.571
  comGC/cglC Streptococcus mitis SK321

61.176

93.407

0.571
  comGC Lactococcus lactis subsp. cremoris KW2

58.14

94.505

0.549
  comYC Streptococcus gordonii str. Challis substr. CH1

56.322

95.604

0.538
  comYC Streptococcus suis isolate S10

52.326

94.505

0.495
  comYC Streptococcus mutans UA159

57.692

85.714

0.495
  comYC Streptococcus mutans UA140

57.692

85.714

0.495
  comGC Latilactobacillus sakei subsp. sakei 23K

46.154

100

0.462
  comGC Staphylococcus aureus MW2

46.835

86.813

0.407
  comGC Staphylococcus aureus N315

46.835

86.813

0.407
  comGC Bacillus subtilis subsp. subtilis str. 168

48.649

81.319

0.396

Multiple sequence alignment