Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   B9N48_RS18145 Genome accession   NZ_CP021169
Coordinates   3470356..3470697 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain TLO3     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3465356..3475697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9N48_RS18130 hepAB 3465599..3468367 (+) 2769 WP_033885048.1 DEAD/DEAH box helicase -
  B9N48_RS18135 ywpJ 3468492..3469349 (-) 858 WP_086344407.1 phosphatase YwpJ -
  B9N48_RS18140 glcR 3469355..3470131 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  B9N48_RS18145 ssbB 3470356..3470697 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  B9N48_RS18150 ywpG 3470774..3471157 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  B9N48_RS18155 ywpF 3471332..3471742 (+) 411 WP_003227794.1 YwpF-like family protein -
  B9N48_RS18160 - 3471882..3472295 (-) 414 Protein_3515 class A sortase -
  B9N48_RS20815 - 3472261..3472383 (-) 123 WP_250621145.1 hypothetical protein -
  B9N48_RS18165 ywpD 3472455..3473312 (+) 858 WP_250621154.1 histidine kinase -
  B9N48_RS18170 mscL 3473359..3473754 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  B9N48_RS18175 fabZ 3473827..3474252 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B9N48_RS18180 rapD 3474444..3475508 (+) 1065 WP_086344408.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=228803 B9N48_RS18145 WP_014478203.1 3470356..3470697(-) (ssbB) [Bacillus subtilis strain TLO3]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=228803 B9N48_RS18145 WP_014478203.1 3470356..3470697(-) (ssbB) [Bacillus subtilis strain TLO3]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment