Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   CAH07_RS02590 Genome accession   NZ_CP021123
Coordinates   494131..494472 (+) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain SEM-9     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 489131..499472
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAH07_RS02555 (CAH07_02515) rapD 489290..490354 (-) 1065 WP_014481149.1 aspartate phosphatase RapD -
  CAH07_RS02560 (CAH07_02520) fabZ 490546..490971 (+) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  CAH07_RS02565 (CAH07_02525) mscL 491044..491439 (+) 396 WP_101172332.1 large conductance mechanosensitive channel protein MscL -
  CAH07_RS02570 (CAH07_02530) ywpD 491470..492306 (-) 837 WP_241495724.1 histidine kinase -
  CAH07_RS02575 (CAH07_02535) - 492554..492946 (+) 393 Protein_506 class A sortase -
  CAH07_RS02580 (CAH07_02540) ywpF 493086..493496 (-) 411 WP_014481144.1 YwpF-like family protein -
  CAH07_RS02585 (CAH07_02545) ywpG 493671..494054 (+) 384 WP_015714843.1 DynA interaction protein YwpG -
  CAH07_RS02590 (CAH07_02550) ssbB 494131..494472 (+) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  CAH07_RS02595 (CAH07_02555) glcR 494696..495472 (+) 777 WP_003244075.1 transcriptional regulator GlcR -
  CAH07_RS02600 (CAH07_02560) ywpJ 495478..496335 (+) 858 WP_129010255.1 phosphatase YwpJ -
  CAH07_RS02610 (CAH07_02570) hepAB 496461..499229 (-) 2769 WP_129010254.1 DEAD/DEAH box helicase -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=228363 CAH07_RS02590 WP_003227798.1 494131..494472(+) (ssbB) [Bacillus subtilis strain SEM-9]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=228363 CAH07_RS02590 WP_003227798.1 494131..494472(+) (ssbB) [Bacillus subtilis strain SEM-9]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment