Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   B9L64_RS10700 Genome accession   NZ_CP020915
Coordinates   2103164..2103505 (-) Length   113 a.a.
NCBI ID   WP_003227798.1    Uniprot ID   C0SPB6
Organism   Bacillus subtilis strain 50-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2098164..2108505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B9L64_RS10685 hepAB 2098405..2101173 (+) 2769 WP_003227803.1 DEAD/DEAH box helicase -
  B9L64_RS10690 ywpJ 2101301..2102158 (-) 858 WP_003227801.1 phosphatase YwpJ -
  B9L64_RS10695 glcR 2102164..2102940 (-) 777 WP_003244075.1 transcriptional regulator GlcR -
  B9L64_RS10700 ssbB 2103164..2103505 (-) 342 WP_003227798.1 single-stranded DNA-binding protein SsbB Machinery gene
  B9L64_RS10705 ywpG 2103582..2103965 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  B9L64_RS10710 ywpF 2104140..2104550 (+) 411 WP_003227794.1 YwpF-like family protein -
  B9L64_RS10715 - 2104690..2105052 (-) 363 Protein_2108 class A sortase -
  B9L64_RS21360 - 2105061..2105426 (-) 366 WP_316069625.1 prealbumin-like fold domain-containing protein -
  B9L64_RS10720 ywpD 2105334..2106170 (+) 837 WP_046381515.1 histidine kinase -
  B9L64_RS10725 mscL 2106217..2106612 (-) 396 WP_021445844.1 large conductance mechanosensitive channel protein MscL -
  B9L64_RS10730 fabZ 2106685..2107110 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  B9L64_RS10735 rapD 2107302..2108366 (+) 1065 WP_003227782.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12520.15 Da        Isoelectric Point: 6.9498

>NTDB_id=227088 B9L64_RS10700 WP_003227798.1 2103164..2103505(-) (ssbB) [Bacillus subtilis strain 50-1]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENEEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=227088 B9L64_RS10700 WP_003227798.1 2103164..2103505(-) (ssbB) [Bacillus subtilis strain 50-1]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGAGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 3VDY

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

100

100

1
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment