Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   VV1_RS05010 Genome accession   NC_004459
Coordinates   1052950..1054053 (+) Length   367 a.a.
NCBI ID   WP_011079083.1    Uniprot ID   A0A3Q0L348
Organism   Vibrio vulnificus CMCP6     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1047950..1059053
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VV1_RS04990 (VV1_1046) rsmB 1048859..1050139 (-) 1281 WP_011079079.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  VV1_RS04995 (VV1_1047) fmt 1050223..1051170 (-) 948 WP_011079080.1 methionyl-tRNA formyltransferase -
  VV1_RS05000 (VV1_1048) def 1051202..1051714 (-) 513 WP_011079081.1 peptide deformylase -
  VV1_RS05005 (VV1_1049) - 1051853..1052950 (+) 1098 WP_011079082.1 LysM peptidoglycan-binding domain-containing protein -
  VV1_RS05010 (VV1_1050) dprA 1052950..1054053 (+) 1104 WP_011079083.1 DNA-processing protein DprA Machinery gene
  VV1_RS05015 (VV1_1051) - 1054056..1054535 (+) 480 WP_011079084.1 DUF494 family protein -
  VV1_RS05020 (VV1_1052) - 1054559..1055128 (+) 570 WP_011079085.1 type I DNA topoisomerase -
  VV1_RS05025 (VV1_1053) - 1055193..1056326 (-) 1134 WP_011079086.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  VV1_RS05030 (VV1_1054) purE 1056330..1056815 (-) 486 WP_011079087.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  VV1_RS05035 (VV1_1055) - 1056996..1057553 (+) 558 WP_013570891.1 L-threonylcarbamoyladenylate synthase -
  VV1_RS05040 (VV1_1056) hemF 1057582..1058499 (+) 918 WP_011079089.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 367 a.a.        Molecular weight: 39604.11 Da        Isoelectric Point: 6.9047

>NTDB_id=22524 VV1_RS05010 WP_011079083.1 1052950..1054053(+) (dprA) [Vibrio vulnificus CMCP6]
MSQDELHAWLALSFTPNIGVKKLTKLLSIDSPLNILRYSQEQLLSLGLSSQQIITLRSSAQQDAEAALQWQQLSSQHHIL
TLHDGLYPPLLKETASPPCQLFVQGDPHCLTKPQIALVGSRHATMQGLQHARDFAAQLVQHGLVVTSGLALGIDGHAHDG
ALRAGGETVAVLGSGFQHIYPARHKGLAERIGQQGALVSEFRPNTKAKAEHFPRRNRIISGLSLGVLVVEAAEKSGSLIT
ARYAAEQGREVFALPNSLHITNARGGNLLIKSGACLVTGVEDVLSEVQTLLDWSTNQQADLFSSSNTEEQLPFPQLLANV
GNEATPVDILANRTNIPVQEVMMQLLELELSGHVVAVNGGYIRRGRG

Nucleotide


Download         Length: 1104 bp        

>NTDB_id=22524 VV1_RS05010 WP_011079083.1 1052950..1054053(+) (dprA) [Vibrio vulnificus CMCP6]
ATGAGTCAGGATGAACTGCATGCTTGGTTAGCACTCAGTTTTACGCCCAATATTGGGGTTAAGAAGCTAACCAAGTTACT
CAGTATTGATTCCCCGCTCAATATTCTGCGTTACTCCCAAGAGCAGCTACTGTCGCTGGGGCTGTCGTCCCAGCAAATCA
TCACCTTGCGAAGTAGTGCTCAGCAAGACGCTGAAGCCGCCCTTCAATGGCAGCAGCTTTCCTCCCAGCATCATATTCTT
ACCCTTCATGATGGCCTATATCCGCCGCTGCTTAAGGAAACGGCTTCACCGCCTTGCCAACTGTTTGTACAGGGTGATCC
TCATTGCTTAACCAAGCCACAAATTGCGCTGGTGGGGAGTCGTCATGCGACCATGCAAGGGTTGCAACATGCTCGCGACT
TTGCGGCTCAACTGGTACAGCATGGGTTGGTGGTGACCAGTGGTTTAGCGCTTGGGATTGATGGCCATGCCCATGATGGT
GCGCTGAGAGCGGGAGGCGAAACCGTTGCCGTTCTTGGTTCGGGCTTCCAACATATTTATCCCGCTCGCCACAAAGGCCT
TGCCGAGAGAATTGGTCAGCAAGGTGCGCTGGTTTCGGAGTTTCGTCCCAATACTAAAGCCAAAGCCGAACATTTTCCTC
GTCGAAATCGAATCATTAGTGGCTTGTCTCTGGGGGTTTTGGTGGTCGAAGCGGCAGAGAAAAGCGGTTCTTTGATTACC
GCCCGTTATGCCGCTGAGCAAGGTCGAGAAGTCTTTGCTTTGCCTAACTCTCTCCATATTACCAATGCACGCGGCGGAAA
CTTGCTGATAAAAAGCGGAGCGTGTTTAGTCACTGGGGTAGAAGATGTGCTGAGTGAAGTGCAAACTTTGCTCGACTGGT
CGACAAACCAACAAGCGGATTTATTTTCTTCCTCTAATACGGAAGAACAATTGCCATTTCCTCAGCTGTTAGCTAACGTA
GGTAATGAGGCTACACCAGTTGATATTCTAGCAAACAGGACCAATATACCTGTGCAAGAAGTCATGATGCAGCTCTTGGA
GCTTGAGCTTTCAGGGCATGTTGTTGCAGTTAACGGTGGCTATATTCGAAGGGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(76-278)

DprA winged helix domain (DprA_WH)

(315-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3Q0L348

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

69.697

98.91

0.689
  dprA Vibrio cholerae strain A1552

58.76

100

0.594
  dprA Glaesserella parasuis strain SC1401

45.283

100

0.458
  dprA Legionella pneumophila strain ERS1305867

44.598

98.365

0.439
  dprA Haemophilus influenzae Rd KW20

41.444

100

0.422
  dprA Neisseria meningitidis MC58

37.783

100

0.409
  dprA Neisseria meningitidis strain C311

37.783

100

0.409
  dprA Neisseria gonorrhoeae strain FA1090

37.215

100

0.401
  dprA Neisseria gonorrhoeae MS11

36.962

100

0.398
  dprA Acinetobacter baylyi ADP1

37.701

100

0.384
  dprA Acinetobacter baumannii D1279779

41.692

90.191

0.376
  dprA Acinetobacter baumannii strain A118

40.785

90.191

0.368

Multiple sequence alignment