Detailed information
Bioinformatically predicted
Overview
| Name | comGC | Type | Machinery gene |
| Locus tag | BSR25_RS08525 | Genome accession | NZ_CP020604 |
| Coordinates | 1681979..1682248 (-) | Length | 89 a.a. |
| NCBI ID | WP_023349160.1 | Uniprot ID | A0AB35KDE0 |
| Organism | Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1676979..1687248
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BSR25_RS08485 (BSR25_1678) | - | 1677515..1678324 (-) | 810 | WP_010906310.1 | metal ABC transporter permease | - |
| BSR25_RS08490 (BSR25_1679) | - | 1678317..1679054 (-) | 738 | WP_010906311.1 | metal ABC transporter ATP-binding protein | - |
| BSR25_RS08495 (BSR25_1680) | - | 1679231..1680073 (-) | 843 | WP_010906312.1 | metal ABC transporter substrate-binding protein | - |
| BSR25_RS08500 (BSR25_1681) | - | 1680070..1680507 (-) | 438 | WP_010906313.1 | zinc-dependent MarR family transcriptional regulator | - |
| BSR25_RS08505 (BSR25_1682) | comGG | 1680588..1680872 (-) | 285 | WP_010906314.1 | competence type IV pilus minor pilin ComGG | Machinery gene |
| BSR25_RS08510 (BSR25_1683) | comGF | 1680911..1681357 (-) | 447 | WP_031296844.1 | competence type IV pilus minor pilin ComGF | Machinery gene |
| BSR25_RS08515 | comGE | 1681320..1681616 (-) | 297 | WP_010906316.1 | competence type IV pilus minor pilin ComGE | Machinery gene |
| BSR25_RS08520 (BSR25_1685) | comGD | 1681588..1682004 (-) | 417 | WP_021216554.1 | competence type IV pilus minor pilin ComGD | Machinery gene |
| BSR25_RS08525 (BSR25_1686) | comGC | 1681979..1682248 (-) | 270 | WP_023349160.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| BSR25_RS08530 (BSR25_1687) | - | 1682395..1682919 (-) | 525 | WP_014570795.1 | GNAT family N-acetyltransferase | - |
| BSR25_RS08535 (BSR25_1688) | - | 1682998..1683777 (-) | 780 | WP_058147788.1 | peptidoglycan amidohydrolase family protein | - |
| BSR25_RS08540 (BSR25_1689) | - | 1683777..1684076 (-) | 300 | WP_031559226.1 | phage holin | - |
| BSR25_RS08545 (BSR25_1690) | - | 1684089..1684439 (-) | 351 | WP_023349296.1 | hypothetical protein | - |
| BSR25_RS08550 (BSR25_1691) | - | 1684459..1686477 (-) | 2019 | WP_415880874.1 | DUF7013 family protein | - |
| BSR25_RS08555 (BSR25_1692) | - | 1686461..1686634 (-) | 174 | WP_086383510.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10113.52 Da Isoelectric Point: 4.2950
>NTDB_id=224926 BSR25_RS08525 WP_023349160.1 1681979..1682248(-) (comGC) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND
MLIVLAIISILILLFVPNLIKEKSQVQKTGEAAVVKVVESQAQLYELDHDDEKPSLSELLSAGMITQKQISAYDNYYDQN
KNEERNFND
Nucleotide
Download Length: 270 bp
>NTDB_id=224926 BSR25_RS08525 WP_023349160.1 1681979..1682248(-) (comGC) [Lactococcus lactis subsp. lactis bv. diacetylactis strain FM03]
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTCAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAGTGCAGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAA
ATGTTAATTGTACTAGCTATTATTAGTATTTTGATATTACTATTTGTTCCAAATTTAATTAAAGAAAAATCACAAGTTCA
AAAAACTGGAGAAGCGGCAGTTGTCAAAGTAGTAGAAAGTCAAGCTCAACTTTATGAATTAGATCATGATGATGAGAAGC
CGAGTCTGTCAGAATTGCTCAGTGCAGGGATGATTACTCAAAAACAAATTTCTGCTTACGATAATTACTATGATCAGAAT
AAAAATGAAGAACGAAATTTTAATGACTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGC | Lactococcus lactis subsp. cremoris KW2 |
88 |
84.27 |
0.742 |
| comYC | Streptococcus gordonii str. Challis substr. CH1 |
57.647 |
95.506 |
0.551 |
| comGC/cglC | Streptococcus pneumoniae Rx1 |
55.056 |
100 |
0.551 |
| comGC/cglC | Streptococcus pneumoniae D39 |
55.056 |
100 |
0.551 |
| comGC/cglC | Streptococcus pneumoniae R6 |
55.056 |
100 |
0.551 |
| comGC/cglC | Streptococcus pneumoniae TIGR4 |
55.056 |
100 |
0.551 |
| comYC | Streptococcus suis isolate S10 |
58.904 |
82.022 |
0.483 |
| comGC/cglC | Streptococcus mitis SK321 |
55.263 |
85.393 |
0.472 |
| comYC | Streptococcus mutans UA140 |
52.055 |
82.022 |
0.427 |
| comYC | Streptococcus mutans UA159 |
52.055 |
82.022 |
0.427 |
| comGC/cglC | Streptococcus mitis NCTC 12261 |
57.812 |
71.91 |
0.416 |