Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   C2U45_RS12295 Genome accession   NZ_CP026199
Coordinates   2376605..2377141 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A9P2PPK2
Organism   Escherichia coli strain ECONIH6     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2371605..2382141
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C2U45_RS12280 (C2U45_12275) - 2371624..2373657 (-) 2034 WP_000807722.1 hypothetical protein -
  C2U45_RS12285 (C2U45_12280) - 2373674..2375212 (-) 1539 WP_001333349.1 site-specific integrase -
  C2U45_RS12290 (C2U45_12285) - 2375199..2376446 (-) 1248 WP_000414651.1 site-specific integrase -
  C2U45_RS12295 (C2U45_12290) ssb 2376605..2377141 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  C2U45_RS12300 (C2U45_12295) uvrA 2377395..2380217 (+) 2823 WP_000357740.1 excinuclease ABC subunit UvrA Machinery gene
  C2U45_RS12305 (C2U45_12300) yjbR 2380252..2380608 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  C2U45_RS12310 (C2U45_12305) yjbQ 2380612..2381028 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  C2U45_RS12315 (C2U45_12310) aphA 2381139..2381852 (-) 714 WP_001226928.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 11076.95 Da        Isoelectric Point: 6.4684

>NTDB_id=224924 C2U45_RS12295 WP_000168305.1 2376605..2377141(-) (ssb) [Escherichia coli strain ECONIH6]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=224924 C2U45_RS12295 WP_000168305.1 2376605..2377141(-) (ssb) [Escherichia coli strain ECONIH6]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAACAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCGAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCGGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGATGACATTCCGTTCTAG

Domains

Predicted by InterProScan.

Type II secretory pathway pseudopilin (ComGE)

(13-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGE Lactococcus lactis subsp. cremoris KW2

68.041

98.98

0.673

Multiple sequence alignment