Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   B5S57_RS20315 Genome accession   NZ_CP020534
Coordinates   3147274..3148383 (-) Length   369 a.a.
NCBI ID   WP_017048702.1    Uniprot ID   -
Organism   Vibrio anguillarum strain 425     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3133714..3146488 3147274..3148383 flank 786


Gene organization within MGE regions


Location: 3133714..3148383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B5S57_RS20250 (B5S57_20095) - 3133714..3134667 (-) 954 WP_047886771.1 type IV toxin-antitoxin system AbiEi family antitoxin -
  B5S57_RS20255 (B5S57_20100) - 3135659..3136069 (+) 411 WP_031818981.1 TIR domain-containing protein -
  B5S57_RS20260 (B5S57_20105) - 3136078..3137025 (+) 948 WP_031818980.1 caspase family protein -
  B5S57_RS20265 (B5S57_20110) - 3137154..3137753 (+) 600 WP_031818979.1 DUF6338 family protein -
  B5S57_RS20270 (B5S57_20115) - 3137755..3137940 (+) 186 WP_096013086.1 hypothetical protein -
  B5S57_RS20275 (B5S57_20120) - 3138360..3140072 (+) 1713 WP_047886773.1 ATP-dependent nuclease -
  B5S57_RS20280 (B5S57_20125) - 3140069..3141487 (+) 1419 WP_096013087.1 UvrD-helicase domain-containing protein -
  B5S57_RS20285 (B5S57_20130) - 3141888..3143642 (+) 1755 WP_096013088.1 hypothetical protein -
  B5S57_RS20290 (B5S57_20135) - 3143759..3143998 (+) 240 WP_096013089.1 hypothetical protein -
  B5S57_RS20295 (B5S57_20140) - 3144009..3144593 (+) 585 WP_096013090.1 ABC-three component system protein -
  B5S57_RS20300 (B5S57_20145) - 3144583..3144807 (+) 225 WP_096013091.1 ABC-three component system middle component 6 -
  B5S57_RS20305 (B5S57_20150) - 3144797..3146488 (+) 1692 WP_096013092.1 DUF2326 domain-containing protein -
  B5S57_RS20310 (B5S57_20155) - 3146816..3147271 (-) 456 WP_107489904.1 DUF494 family protein -
  B5S57_RS20315 (B5S57_20160) dprA 3147274..3148383 (-) 1110 WP_017048702.1 DNA-processing protein DprA Machinery gene

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 39849.61 Da        Isoelectric Point: 6.7182

>NTDB_id=223979 B5S57_RS20315 WP_017048702.1 3147274..3148383(-) (dprA) [Vibrio anguillarum strain 425]
MEQNELAAWLAFSFVPKLGGKKLSRLASVASLAHLIDYSERELAALGLVQDQIRYLRETAPQEVEECLSWQQANESHHIL
TPFCDGYPSLLKEIATAPPVLFVKGRITALSDPQMAIVGSRNASPDGQRVAHQFAREFVQQGLLVTSGLALGIDGHAHDG
ALQAGGETIAVLGSGLESIYPARHKKLAQRVMESGALVSEFRPKAKPRPDNFPRRNRIISGLAVGVLVVEAAEKSGSLIT
ARYAAEQGRDVFVIPGSIANPNCHGSNQLIRCGACLVQNSEQVLSEIGTLVDWSLRQKQPQPDLFSVQSDQQLPFAELLA
NVGVEATPVDILASRTHIPVHEVMMQLLELELSGHVVAVSGGYIRKGKG

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=223979 B5S57_RS20315 WP_017048702.1 3147274..3148383(-) (dprA) [Vibrio anguillarum strain 425]
ATGGAGCAGAACGAATTAGCGGCGTGGCTAGCATTCAGCTTTGTGCCAAAATTGGGTGGCAAGAAACTTTCTCGTCTTGC
TAGCGTCGCTTCTCTTGCTCATTTAATTGACTATTCCGAGCGGGAGTTAGCCGCGTTGGGTCTAGTTCAAGATCAAATCC
GTTATCTGCGCGAGACGGCCCCTCAAGAAGTTGAAGAATGCCTAAGTTGGCAGCAAGCTAATGAGTCTCATCATATCCTT
ACTCCATTTTGCGATGGTTATCCTTCTTTACTAAAAGAAATTGCTACCGCACCTCCGGTTTTATTTGTCAAAGGACGAAT
AACAGCACTCTCTGATCCGCAAATGGCGATCGTCGGCAGTCGTAATGCGAGCCCTGATGGCCAACGAGTTGCTCATCAGT
TTGCGCGAGAATTTGTGCAACAGGGCTTGCTTGTTACCAGTGGTTTGGCATTAGGTATTGATGGACATGCTCATGACGGT
GCGTTGCAAGCGGGTGGTGAGACGATAGCCGTGCTCGGTTCGGGCCTTGAATCTATTTACCCAGCGCGACATAAAAAATT
AGCGCAACGGGTGATGGAAAGCGGAGCATTAGTCTCGGAATTTCGTCCCAAAGCCAAACCAAGGCCAGATAACTTTCCGC
GGCGAAATCGCATTATCAGTGGGTTAGCGGTTGGTGTTTTAGTGGTGGAGGCGGCGGAGAAAAGTGGCTCGTTGATCACG
GCGCGCTATGCGGCTGAGCAAGGGCGAGATGTGTTTGTTATTCCGGGCTCCATTGCTAACCCAAATTGCCACGGTAGTAA
TCAACTTATTCGTTGTGGGGCGTGCTTGGTGCAAAACAGTGAACAAGTATTATCTGAAATTGGCACCTTAGTAGACTGGT
CATTGCGCCAAAAGCAGCCTCAACCTGATTTATTTTCTGTACAGAGCGATCAGCAATTGCCATTTGCTGAACTGTTAGCT
AACGTAGGAGTAGAGGCTACGCCTGTTGATATTCTTGCGAGCAGGACCCATATACCTGTCCATGAAGTCATGATGCAGCT
TTTAGAACTTGAGCTTTCAGGTCATGTTGTTGCCGTTTCTGGCGGCTATATTCGTAAGGGGAAGGGTTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-278)

DprA winged helix domain (DprA_WH)

(316-362)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

64.208

99.187

0.637
  dprA Vibrio cholerae strain A1552

61.456

100

0.618
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.461
  dprA Legionella pneumophila strain ERS1305867

43.802

98.374

0.431
  dprA Neisseria meningitidis strain C311

37.975

100

0.407
  dprA Neisseria meningitidis MC58

37.975

100

0.407
  dprA Neisseria gonorrhoeae MS11

36.387

100

0.388
  dprA Acinetobacter baumannii D1279779

40.51

95.664

0.388
  dprA Neisseria gonorrhoeae strain FA1090

36.132

100

0.385
  dprA Acinetobacter baumannii strain A118

39.943

95.664

0.382
  dprA Acinetobacter baylyi ADP1

41.742

90.244

0.377
  dprA Haemophilus influenzae Rd KW20

50.365

74.255

0.374

Multiple sequence alignment