Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   A6J82_RS10150 Genome accession   NZ_CP020449
Coordinates   1970619..1971035 (-) Length   138 a.a.
NCBI ID   WP_000609377.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain FDAARGOS_254     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1965619..1976035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J82_RS10085 (A6J82_10080) - 1966063..1966488 (-) 426 WP_000533373.1 DUF1492 domain-containing protein -
  A6J82_RS10090 (A6J82_10085) - 1966879..1967145 (-) 267 WP_000660741.1 hypothetical protein -
  A6J82_RS10095 (A6J82_10090) - 1967142..1967675 (-) 534 WP_001019148.1 DUF1642 domain-containing protein -
  A6J82_RS11765 (A6J82_10095) - 1967768..1967899 (-) 132 WP_011058321.1 hypothetical protein -
  A6J82_RS10105 (A6J82_10100) - 1967982..1968314 (-) 333 WP_000052302.1 hypothetical protein -
  A6J82_RS10110 (A6J82_10105) - 1968317..1968586 (-) 270 WP_000139629.1 hypothetical protein -
  A6J82_RS10115 (A6J82_10110) - 1968583..1968747 (-) 165 WP_000159369.1 hypothetical protein -
  A6J82_RS10120 (A6J82_10115) - 1968744..1969160 (-) 417 WP_000612734.1 YopX family protein -
  A6J82_RS10130 (A6J82_10125) - 1969295..1969597 (-) 303 WP_000763909.1 nucleotide modification associated domain-containing protein -
  A6J82_RS10135 (A6J82_10130) - 1969609..1969956 (-) 348 WP_000129030.1 hypothetical protein -
  A6J82_RS10140 (A6J82_10135) - 1969946..1970422 (-) 477 WP_000143298.1 RusA family crossover junction endodeoxyribonuclease -
  A6J82_RS10145 (A6J82_10140) - 1970412..1970615 (-) 204 WP_000165747.1 hypothetical protein -
  A6J82_RS10150 (A6J82_10145) ssb 1970619..1971035 (-) 417 WP_000609377.1 single-stranded DNA-binding protein Machinery gene
  A6J82_RS10155 (A6J82_10150) - 1971028..1971702 (-) 675 WP_001231960.1 ERF family protein -
  A6J82_RS10160 (A6J82_10155) - 1971703..1972185 (-) 483 WP_000323859.1 siphovirus Gp157 family protein -
  A6J82_RS10165 (A6J82_10160) - 1972187..1972348 (-) 162 WP_001001351.1 hypothetical protein -
  A6J82_RS10170 (A6J82_10165) - 1972351..1972605 (-) 255 WP_000229417.1 hypothetical protein -
  A6J82_RS10175 (A6J82_10170) - 1972616..1972756 (-) 141 WP_000166038.1 hypothetical protein -
  A6J82_RS10180 (A6J82_10175) - 1972753..1972986 (-) 234 WP_000371783.1 hypothetical protein -
  A6J82_RS10185 (A6J82_10180) - 1972967..1973827 (-) 861 WP_000774716.1 phage replisome organizer N-terminal domain-containing protein -
  A6J82_RS10190 (A6J82_10185) - 1973838..1974062 (-) 225 WP_000431178.1 hypothetical protein -
  A6J82_RS10195 (A6J82_10190) - 1974200..1974430 (-) 231 WP_000879943.1 hypothetical protein -
  A6J82_RS10205 (A6J82_10200) - 1974735..1975484 (-) 750 WP_001072517.1 phage antirepressor Ant -
  A6J82_RS10210 (A6J82_10205) - 1975552..1975743 (-) 192 WP_001183891.1 helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 138 a.a.        Molecular weight: 15626.28 Da        Isoelectric Point: 6.3299

>NTDB_id=223136 A6J82_RS10150 WP_000609377.1 1970619..1971035(-) (ssb) [Streptococcus agalactiae strain FDAARGOS_254]
MINNIVLVGRMTKDAELRYTPSNQAVATFSLAVNRNFKNQSGEREADFINCVIWRQQAENLANWAKKGALVGITGRIQTR
NYENQQGQRIYVTEVVAENFQLLESRNSQQQTNQSGNSSNSYFGNANKMDISDDDLPF

Nucleotide


Download         Length: 417 bp        

>NTDB_id=223136 A6J82_RS10150 WP_000609377.1 1970619..1971035(-) (ssb) [Streptococcus agalactiae strain FDAARGOS_254]
ATGATTAACAACATTGTACTAGTAGGTCGCATGACCAAGGATGCCGAACTTCGTTATACACCAAGTAATCAAGCGGTAGC
TACTTTTTCACTTGCAGTTAATCGTAATTTTAAAAATCAATCTGGCGAACGTGAGGCTGATTTTATTAACTGTGTTATTT
GGCGCCAACAAGCTGAAAACTTGGCTAACTGGGCAAAAAAAGGTGCTTTGGTTGGAATTACAGGTCGTATCCAAACGCGT
AATTATGAAAACCAACAAGGTCAACGTATCTATGTAACAGAAGTTGTTGCGGAAAATTTCCAATTATTAGAAAGTCGCAA
TAGCCAACAACAGACTAATCAAAGCGGCAATAGTTCTAATTCTTATTTTGGCAATGCCAACAAAATGGATATTTCAGATG
ATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

56.471

100

0.696
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.814

100

0.696
  ssbB Streptococcus sobrinus strain NIDR 6715-7

44.928

100

0.449
  ssbB Bacillus subtilis subsp. subtilis str. 168

52.212

81.884

0.428
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.029

100

0.42
  ssbB/cilA Streptococcus mitis NCTC 12261

41.304

100

0.413
  ssbB/cilA Streptococcus pneumoniae R6

41.304

100

0.413
  ssbB/cilA Streptococcus mitis SK321

41.304

100

0.413
  ssbB/cilA Streptococcus pneumoniae Rx1

41.304

100

0.413
  ssbB/cilA Streptococcus pneumoniae D39

41.304

100

0.413
  ssbA Streptococcus mutans UA159

39.855

100

0.399
  ssb Glaesserella parasuis strain SC1401

29.944

100

0.384

Multiple sequence alignment