Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A6J74_RS06030 Genome accession   NZ_CP020437
Coordinates   869417..869752 (-) Length   111 a.a.
NCBI ID   WP_000982002.1    Uniprot ID   A0A2C4CW68
Organism   Bacillus sp. FDAARGOS_235     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 864417..874752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J74_RS06000 (A6J74_05995) - 865271..866047 (-) 777 WP_000637472.1 class I SAM-dependent methyltransferase -
  A6J74_RS06005 (A6J74_06000) - 866097..866531 (-) 435 WP_000063703.1 BrxA/BrxB family bacilliredoxin -
  A6J74_RS06010 (A6J74_06005) - 866614..866997 (-) 384 WP_000634894.1 thiol-disulfide oxidoreductase DCC family protein -
  A6J74_RS06015 (A6J74_06010) - 867001..868128 (-) 1128 WP_000692595.1 conserved virulence factor C family protein -
  A6J74_RS06025 (A6J74_06020) - 868667..869056 (-) 390 WP_000940647.1 hypothetical protein -
  A6J74_RS06030 (A6J74_06025) ssbA 869417..869752 (-) 336 WP_000982002.1 single-stranded DNA-binding protein Machinery gene
  A6J74_RS06035 (A6J74_06030) - 869914..870168 (-) 255 WP_000975118.1 DUF4318 domain-containing protein -
  A6J74_RS06040 (A6J74_06035) - 870274..871005 (-) 732 WP_001260657.1 Bax inhibitor-1/YccA family protein -
  A6J74_RS06045 (A6J74_06040) - 871081..872976 (-) 1896 WP_000783187.1 ABC-F family ATP-binding cassette domain-containing protein -
  A6J74_RS06050 (A6J74_06045) - 872973..873620 (-) 648 WP_000165951.1 HD domain-containing protein -
  A6J74_RS06055 (A6J74_06050) - 873730..874458 (+) 729 WP_000499664.1 hypothetical protein -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12721.60 Da        Isoelectric Point: 9.8971

>NTDB_id=223035 A6J74_RS06030 WP_000982002.1 869417..869752(-) (ssbA) [Bacillus sp. FDAARGOS_235]
MMNRVVLIGRLTKDPELYYTKQGVAYARICVAVNRGFRNSLGEQQADFINCVVWRRAAENVTEYCTKGSLVGITGRIHTN
NYDDEKGKKIYRTEVVIESITFLERRRKGAS

Nucleotide


Download         Length: 336 bp        

>NTDB_id=223035 A6J74_RS06030 WP_000982002.1 869417..869752(-) (ssbA) [Bacillus sp. FDAARGOS_235]
ATGATGAATCGAGTTGTATTAATCGGTAGATTGACAAAGGATCCAGAATTATACTACACAAAACAAGGCGTCGCTTATGC
ACGAATATGTGTTGCAGTGAATAGAGGATTTCGAAATAGTTTAGGTGAACAACAAGCAGATTTTATAAATTGTGTCGTTT
GGCGAAGAGCAGCTGAAAATGTAACAGAATATTGTACGAAGGGATCACTTGTTGGAATTACAGGGCGTATTCATACGAAT
AATTACGATGATGAAAAAGGAAAGAAAATATATAGAACTGAAGTTGTGATTGAGAGTATTACCTTTTTGGAGAGAAGGAG
GAAGGGGGCATCGTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2C4CW68

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.547

95.495

0.55
  ssb Latilactobacillus sakei subsp. sakei 23K

51.887

95.495

0.495
  ssbB Bacillus subtilis subsp. subtilis str. 168

50

97.297

0.486
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.636

99.099

0.432
  ssbB Lactococcus lactis subsp. cremoris KW2

44.762

94.595

0.423
  ssbB/cilA Streptococcus pneumoniae TIGR4

42.727

99.099

0.423
  ssbA Streptococcus mutans UA159

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae Rx1

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae D39

41.818

99.099

0.414
  ssbB/cilA Streptococcus pneumoniae R6

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis SK321

41.818

99.099

0.414
  ssbB/cilA Streptococcus mitis NCTC 12261

40.909

99.099

0.405

Multiple sequence alignment