Detailed information
Bioinformatically predicted
Overview
| Name | ssbB/cilA | Type | Machinery gene |
| Locus tag | A6J72_RS06870 | Genome accession | NZ_CP020433 |
| Coordinates | 1355014..1355409 (+) | Length | 131 a.a. |
| NCBI ID | WP_082312075.1 | Uniprot ID | - |
| Organism | Streptococcus intermedius strain FDAARGOS_233 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 1350014..1360409
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| A6J72_RS06825 (A6J72_09680) | - | 1350078..1350767 (+) | 690 | WP_225791021.1 | TNT domain-containing protein | - |
| A6J72_RS06830 (A6J72_06835) | - | 1350769..1351092 (+) | 324 | WP_082312069.1 | Imm59 family immunity protein | - |
| A6J72_RS06835 (A6J72_06840) | - | 1351128..1351424 (+) | 297 | WP_263969848.1 | Imm59 family immunity protein | - |
| A6J72_RS06840 (A6J72_06845) | - | 1351417..1351743 (+) | 327 | WP_082312071.1 | Imm59 family immunity protein | - |
| A6J72_RS06845 (A6J72_06850) | - | 1352027..1352377 (+) | 351 | WP_082312072.1 | hypothetical protein | - |
| A6J72_RS06850 (A6J72_06855) | pepA | 1352514..1353578 (-) | 1065 | WP_105255942.1 | glutamyl aminopeptidase | - |
| A6J72_RS06855 (A6J72_06860) | - | 1353698..1353985 (+) | 288 | WP_009569468.1 | DUF4651 domain-containing protein | - |
| A6J72_RS06860 (A6J72_06865) | - | 1353982..1354299 (+) | 318 | WP_082312073.1 | thioredoxin family protein | - |
| A6J72_RS06865 (A6J72_06870) | ytpR | 1354316..1354942 (+) | 627 | WP_082312074.1 | YtpR family tRNA-binding protein | - |
| A6J72_RS06870 (A6J72_06875) | ssbB/cilA | 1355014..1355409 (+) | 396 | WP_082312075.1 | single-stranded DNA-binding protein | Machinery gene |
| A6J72_RS06875 (A6J72_06880) | - | 1355626..1356612 (+) | 987 | WP_021003238.1 | sugar ABC transporter substrate-binding protein | - |
| A6J72_RS06880 (A6J72_06885) | - | 1356612..1357925 (+) | 1314 | WP_003075992.1 | sensor histidine kinase | - |
| A6J72_RS06885 (A6J72_06890) | - | 1357918..1358601 (+) | 684 | WP_003076096.1 | response regulator transcription factor | - |
| A6J72_RS06890 (A6J72_06895) | - | 1358598..1359884 (+) | 1287 | WP_082312076.1 | ABC transporter substrate-binding protein | - |
Sequence
Protein
Download Length: 131 a.a. Molecular weight: 14701.62 Da Isoelectric Point: 5.9381
>NTDB_id=223018 A6J72_RS06870 WP_082312075.1 1355014..1355409(+) (ssbB/cilA) [Streptococcus intermedius strain FDAARGOS_233]
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF
MYNKVILIGRLVNTPELNKTANDKSVARATLAVNRRYKGQNGEREADFVNVVVWGKLAETLASYATKGSLISLDGELRTR
RYEKDGVTHYVTEVLCNGFQLLESRAQRALRENNTGADLADLVLEEEELPF
Nucleotide
Download Length: 396 bp
>NTDB_id=223018 A6J72_RS06870 WP_082312075.1 1355014..1355409(+) (ssbB/cilA) [Streptococcus intermedius strain FDAARGOS_233]
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCGGAATTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCTGTCAATCGTCGCTACAAAGGGCAAAATGGCGAACGAGAAGCAGACTTTGTAAATGTCGTTGTTT
GGGGAAAATTAGCTGAAACCTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGCTATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGTGAAAATAATACAGGCGCAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAATTACCGTTTTAA
ATGTATAATAAAGTAATTTTAATCGGTCGCTTGGTGAATACACCGGAATTAAACAAAACAGCTAATGATAAATCTGTGGC
GCGTGCAACACTTGCTGTCAATCGTCGCTACAAAGGGCAAAATGGCGAACGAGAAGCAGACTTTGTAAATGTCGTTGTTT
GGGGAAAATTAGCTGAAACCTTAGCAAGTTATGCAACAAAAGGAAGTTTAATATCTCTTGATGGAGAACTTCGTACCCGC
CGCTATGAGAAAGACGGTGTGACACATTATGTAACGGAAGTGCTTTGCAATGGCTTCCAGCTATTAGAAAGTCGTGCCCA
ACGAGCGCTTCGTGAAAATAATACAGGCGCAGATTTAGCAGATTTGGTTTTGGAAGAAGAAGAATTACCGTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
84.733 |
100 |
0.847 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
83.969 |
100 |
0.84 |
| ssbB/cilA | Streptococcus mitis SK321 |
83.969 |
100 |
0.84 |
| ssbA | Streptococcus mutans UA159 |
80.153 |
100 |
0.802 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
76.336 |
100 |
0.763 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
61.607 |
85.496 |
0.527 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
50 |
80.916 |
0.405 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
46.018 |
86.26 |
0.397 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
45.37 |
82.443 |
0.374 |