Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   A6J51_RS02750 Genome accession   NZ_CP020423
Coordinates   469390..469836 (+) Length   148 a.a.
NCBI ID   WP_080610960.1    Uniprot ID   -
Organism   Neisseria meningitidis strain FDAARGOS_212     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 464390..474836
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A6J51_RS02715 (A6J51_02635) - 465515..466366 (-) 852 WP_021438208.1 RNA polymerase sigma-54 factor -
  A6J51_RS02720 (A6J51_02640) katA 466714..468228 (+) 1515 WP_002221625.1 catalase KatA -
  A6J51_RS14065 - 468304..468441 (+) 138 WP_153308413.1 hypothetical protein -
  A6J51_RS02730 (A6J51_02645) - 468553..468765 (+) 213 WP_002239456.1 hypothetical protein -
  A6J51_RS14590 - 468849..468977 (-) 129 WP_256864603.1 hypothetical protein -
  A6J51_RS02750 (A6J51_02665) pilE 469390..469836 (+) 447 WP_080610960.1 pilin Machinery gene
  A6J51_RS02760 (A6J51_02670) - 470290..470790 (+) 501 WP_002220237.1 REP-associated tyrosine transposase -
  A6J51_RS02765 (A6J51_02675) - 471266..471832 (+) 567 WP_002236626.1 manganese efflux pump MntP family protein -
  A6J51_RS14595 - 472106..472237 (-) 132 WP_257623167.1 hypothetical protein -
  A6J51_RS02770 (A6J51_02680) - 472254..474290 (-) 2037 WP_080611346.1 M3 family metallopeptidase -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 15618.91 Da        Isoelectric Point: 9.3582

>NTDB_id=222754 A6J51_RS02750 WP_080610960.1 469390..469836(+) (pilE) [Neisseria meningitidis strain FDAARGOS_212]
MKAIQKGFTLIELMIVIAIVGILAAVALPAYQDYTARAQMSEALTLAEGQKSAVVEYYSDNGTFPNGNTSAGIAASNEIK
GKYVASVKVEGNASVASITATMNSSNVNKDIKGKTLVLVGKQNSGSFSWECKKGSVDEKFLPSTCRTK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=222754 A6J51_RS02750 WP_080610960.1 469390..469836(+) (pilE) [Neisseria meningitidis strain FDAARGOS_212]
ATGAAAGCAATCCAAAAAGGTTTCACCCTGATCGAGCTGATGATCGTCATCGCCATCGTCGGTATCTTGGCAGCCGTCGC
CCTGCCCGCATACCAAGACTACACCGCGCGCGCCCAAATGTCCGAAGCCCTGACTTTGGCAGAAGGTCAAAAATCCGCAG
TGGTCGAGTATTATTCCGACAACGGCACATTCCCGAACGGCAATACTTCCGCAGGTATTGCTGCCTCTAACGAGATTAAA
GGTAAGTATGTGGCATCGGTTAAGGTTGAAGGTAATGCCTCTGTTGCTTCTATTACCGCTACCATGAACTCTAGTAATGT
GAATAAGGACATCAAAGGTAAAACCTTGGTACTCGTCGGCAAACAAAACTCCGGCTCGTTCTCTTGGGAATGTAAAAAAG
GTTCTGTGGACGAAAAATTCTTGCCATCTACCTGCCGCACCAAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-28)

Pilin (bacterial filament) (Pilin)

(36-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria gonorrhoeae MS11

58.788

100

0.655
  pilE Neisseria gonorrhoeae strain FA1090

56.173

100

0.615
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

41.176

100

0.473
  comP Acinetobacter baylyi ADP1

42.384

100

0.432
  pilA/pilA1 Eikenella corrodens VA1

40.506

100

0.432
  pilA Ralstonia pseudosolanacearum GMI1000

36.842

100

0.426
  pilA2 Legionella pneumophila str. Paris

42.657

96.622

0.412
  pilA2 Legionella pneumophila strain ERS1305867

41.259

96.622

0.399
  pilA Vibrio campbellii strain DS40M4

38.255

100

0.385
  pilA Pseudomonas aeruginosa PAK

36.364

100

0.378
  pilA/pilAI Pseudomonas stutzeri DSM 10701

36.986

98.649

0.365

Multiple sequence alignment