Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   BSK2_RS18515 Genome accession   NZ_CP020367
Coordinates   3610873..3611214 (-) Length   113 a.a.
NCBI ID   WP_014478203.1    Uniprot ID   A0A0C3GLH9
Organism   Bacillus subtilis strain GQJK2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3605873..3616214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSK2_RS18495 (BSK2_18495) hepAB 3606116..3608884 (+) 2769 WP_080529895.1 DEAD/DEAH box helicase -
  BSK2_RS18505 (BSK2_18505) ywpJ 3609010..3609867 (-) 858 WP_080529897.1 phosphatase YwpJ -
  BSK2_RS18510 (BSK2_18510) glcR 3609873..3610649 (-) 777 WP_080529898.1 transcriptional regulator GlcR -
  BSK2_RS18515 (BSK2_18515) ssbB 3610873..3611214 (-) 342 WP_014478203.1 single-stranded DNA-binding protein SsbB Machinery gene
  BSK2_RS18520 (BSK2_18520) ywpG 3611291..3611674 (-) 384 WP_014478204.1 DynA interaction protein YwpG -
  BSK2_RS18525 (BSK2_18525) ywpF 3611849..3612259 (+) 411 WP_003227794.1 YwpF-like family protein -
  BSK2_RS18530 (BSK2_18530) - 3612399..3612791 (-) 393 Protein_3597 class A sortase -
  BSK2_RS21280 - 3612778..3612936 (-) 159 WP_175407070.1 hypothetical protein -
  BSK2_RS18535 (BSK2_18535) ywpD 3613039..3613875 (+) 837 WP_250622056.1 histidine kinase -
  BSK2_RS18540 (BSK2_18540) mscL 3613922..3614317 (-) 396 WP_080530094.1 large conductance mechanosensitive channel protein MscL -
  BSK2_RS18545 (BSK2_18545) fabZ 3614390..3614815 (-) 426 WP_003221796.1 3-hydroxyacyl-ACP dehydratase FabZ -
  BSK2_RS18550 (BSK2_18550) rapD 3615007..3616071 (+) 1065 WP_080529900.1 aspartate phosphatase RapD -

Sequence

Protein


Download         Length: 113 a.a.        Molecular weight: 12462.11 Da        Isoelectric Point: 7.8150

>NTDB_id=221788 BSK2_RS18515 WP_014478203.1 3610873..3611214(-) (ssbB) [Bacillus subtilis strain GQJK2]
MFNQVMLVGRLTKDPDLRYTSAGAAVAHVTLAVNRSFKNASGEIEADYVNCTLWRKTAENTALYCQKGSLVGVSGRIQTR
SYENAEGVNVYVTEVLADTVRFMDPKPREKAAD

Nucleotide


Download         Length: 342 bp        

>NTDB_id=221788 BSK2_RS18515 WP_014478203.1 3610873..3611214(-) (ssbB) [Bacillus subtilis strain GQJK2]
ATGTTCAATCAGGTCATGCTTGTCGGACGTCTTACAAAAGATCCTGATCTTCGCTACACTTCCGCCGGTGCGGCAGTTGC
ACATGTTACGCTCGCGGTGAACCGCAGCTTCAAGAATGCTTCAGGTGAAATCGAAGCTGATTACGTCAATTGCACACTTT
GGAGAAAAACAGCTGAAAACACGGCGTTGTATTGCCAAAAAGGTTCTCTCGTCGGCGTAAGCGGACGGATTCAGACAAGA
AGCTATGAAAACGCGGAAGGCGTTAACGTGTATGTAACAGAAGTGTTGGCTGACACTGTTCGTTTTATGGACCCTAAACC
CCGGGAAAAAGCTGCTGATTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0C3GLH9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

99.115

100

0.991
  ssbA Bacillus subtilis subsp. subtilis str. 168

64.151

93.805

0.602
  ssb Latilactobacillus sakei subsp. sakei 23K

59.434

93.805

0.558
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.37

95.575

0.434
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.444

95.575

0.425
  ssbB/cilA Streptococcus mitis NCTC 12261

44.444

95.575

0.425
  ssbB/cilA Streptococcus pneumoniae Rx1

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae D39

43.519

95.575

0.416
  ssbB/cilA Streptococcus pneumoniae R6

43.519

95.575

0.416
  ssbB/cilA Streptococcus mitis SK321

43.519

95.575

0.416
  ssbA Streptococcus mutans UA159

44.34

93.805

0.416
  ssbB Lactococcus lactis subsp. cremoris KW2

41.905

92.92

0.389

Multiple sequence alignment