Detailed information NTG0221666

Bioinformatically predicted

Overview

• Name: ssbB
• Type: Machinery gene
• Locus tag: BLMD_RS19385
• Genome accession: NZ_CP020352
• Coordinates: 3849294..3849641 (-)
• Length: 115 a.a.
• NCBI ID: WP_048350529.1
• Uniprot ID: -
• Organism: Bacillus paralicheniformis strain MDJK30
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 3844294..3854641

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BLMD_RS19355 (BLMD_19355)	srlD	3844905..3845690 (-)	786	WP_048350524.1	sorbitol-6-phosphate dehydrogenase	-
BLMD_RS19360 (BLMD_19360)	-	3845705..3846076 (-)	372	WP_048350525.1	PTS glucitol/sorbitol transporter subunit IIA	-
BLMD_RS19365 (BLMD_19365)	-	3846100..3847107 (-)	1008	WP_048350526.1	PTS glucitol/sorbitol transporter subunit IIB	-
BLMD_RS19370 (BLMD_19370)	-	3847124..3847672 (-)	549	WP_043925087.1	PTS glucitol/sorbitol transporter subunit IIC	-
BLMD_RS19375 (BLMD_19375)	-	3847669..3848112 (-)	444	WP_048350527.1	transcriptional regulator GutM	-
BLMD_RS19380 (BLMD_19380)	-	3848109..3849071 (-)	963	WP_048350528.1	sugar-binding transcriptional regulator	-
BLMD_RS19385 (BLMD_19385)	ssbB	3849294..3849641 (-)	348	WP_048350529.1	single-stranded DNA-binding protein	Machinery gene
BLMD_RS19390 (BLMD_19390)	-	3849746..3850117 (-)	372	WP_020453205.1	hypothetical protein	-
BLMD_RS19395 (BLMD_19395)	-	3850299..3850712 (+)	414	WP_020453206.1	YwpF-like family protein	-
BLMD_RS19400 (BLMD_19400)	mscL	3850752..3851132 (-)	381	WP_020453207.1	large conductance mechanosensitive channel protein MscL	-
BLMD_RS19405 (BLMD_19405)	fabZ	3851202..3851636 (-)	435	WP_003185902.1	3-hydroxyacyl-ACP dehydratase FabZ	-
BLMD_RS19410 (BLMD_19410)	-	3851819..3852646 (-)	828	WP_020453208.1	flagellar hook-basal body protein	-
BLMD_RS19415 (BLMD_19415)	-	3852690..3853529 (-)	840	WP_075751539.1	flagellar hook-basal body protein	-

Sequence

Protein

• Length: 115 a.a.
• Molecular weight: 12779.53 Da
• Isoelectric Point: 6.9543

>NTDB_id=221666 BLMD_RS19385 WP_048350529.1 3849294..3849641(-) (ssbB) [Bacillus paralicheniformis strain MDJK30]
MFNEIMLVGRLTKDPELRYTSDGVPVANVTLAVSRPFKNAAGEIEADFVNCTLWRKTAVNTAEYCEKGSIIGLSGRIQTR
QYVNSEGERVFITEVVARSVRFLGESRKAHEPAEA

Nucleotide

• Length: 348 bp

>NTDB_id=221666 BLMD_RS19385 WP_048350529.1 3849294..3849641(-) (ssbB) [Bacillus paralicheniformis strain MDJK30]
ATGTTTAATGAGATCATGCTGGTCGGGCGTTTGACAAAAGATCCCGAACTTCGGTACACATCTGACGGTGTCCCTGTTGC
AAATGTGACGCTGGCTGTCAGCAGGCCTTTCAAAAATGCAGCAGGCGAAATTGAAGCGGACTTTGTCAATTGCACCCTGT
GGCGCAAAACTGCCGTGAACACAGCCGAATATTGCGAAAAAGGCTCCATCATCGGGCTGAGCGGAAGAATCCAGACTCGC
CAATACGTCAATTCAGAAGGCGAGCGCGTTTTTATTACAGAAGTTGTCGCCCGATCAGTCAGATTTTTGGGAGAAAGCCG
AAAAGCCCATGAGCCGGCGGAAGCTTAA

Domains

Predicted by InterproScan.

• Single-strand binding protein family (SSB) (2-103)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB	Bacillus subtilis subsp. subtilis str. 168	72.816	89.565	0.652
ssbA	Bacillus subtilis subsp. subtilis str. 168	60.194	89.565	0.539
ssb	Latilactobacillus sakei subsp. sakei 23K	52.252	96.522	0.504
ssbA	Streptococcus mutans UA159	45.794	93.043	0.426
ssbB	Lactococcus lactis subsp. cremoris KW2	44.34	92.174	0.409
ssbB	Streptococcus sobrinus strain NIDR 6715-7	43.925	93.043	0.409
ssbB/cilA	Streptococcus mitis NCTC 12261	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae TIGR4	42.991	93.043	0.4
ssbB/cilA	Streptococcus pneumoniae Rx1	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae D39	42.056	93.043	0.391
ssbB/cilA	Streptococcus pneumoniae R6	42.056	93.043	0.391
ssbB/cilA	Streptococcus mitis SK321	42.056	93.043	0.391