Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   BVC89_RS09640 Genome accession   NZ_CP020038
Coordinates   2274065..2275276 (-) Length   403 a.a.
NCBI ID   WP_086930995.1    Uniprot ID   -
Organism   Agarilytica rhodophyticola strain 017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2269065..2280276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVC89_RS09610 - 2269575..2270033 (+) 459 WP_086930989.1 hypothetical protein -
  BVC89_RS09615 - 2270394..2271143 (+) 750 WP_086930990.1 hypothetical protein -
  BVC89_RS09620 pilE 2271314..2271826 (-) 513 WP_086930991.1 pilin Machinery gene
  BVC89_RS09625 - 2272215..2272406 (-) 192 WP_086930992.1 DNA gyrase inhibitor YacG -
  BVC89_RS09630 coaE 2272413..2273021 (-) 609 WP_086930993.1 dephospho-CoA kinase -
  BVC89_RS09635 pilD 2273025..2273918 (-) 894 WP_086930994.1 A24 family peptidase Machinery gene
  BVC89_RS09640 pilC 2274065..2275276 (-) 1212 WP_086930995.1 type II secretion system F family protein Machinery gene
  BVC89_RS09645 pilB 2275283..2276992 (-) 1710 WP_086930996.1 type IV-A pilus assembly ATPase PilB Machinery gene
  BVC89_RS09650 - 2277564..2277656 (+) 93 Protein_1872 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  BVC89_RS09655 - 2278023..2278997 (+) 975 WP_086930997.1 NADPH:quinone oxidoreductase family protein -
  BVC89_RS09660 nadC 2279112..2279954 (-) 843 WP_086930998.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 403 a.a.        Molecular weight: 43699.16 Da        Isoelectric Point: 7.7515

>NTDB_id=220620 BVC89_RS09640 WP_086930995.1 2274065..2275276(-) (pilC) [Agarilytica rhodophyticola strain 017]
MAATSEVFVYKGIDRKGNKVEGEVSSSSSALAKAQLVKQGIRTTGVKRKPKPLFGGGGKAIKPMDIAVFTRQMATMMKAG
VPLVQSFDIVADGSENPNMTNLIKSIKEDVASGGGFANSLRKQPKYFDELFCNLVESGEQSGALETMLDRIALYKEKTEQ
LKAKIKKALTYPIAVVVVAIVVTAILLIKVVPQFAETFSSFGANLPAFTLFVLHLSDLAQEYWWIVLISLTGFFLAFGKL
KEKSFAFRSAVDKVTLKIPVIGDIIYQSICARFARTLSTTFAAGVPLIDALESVAGSTGNIHYEKCTLKIREEVSAGTQL
NIAIDHTRMFPSLLIQMTSIGEESGALDEMLDKVATYYEEAVDNLVDSLTSLLEPLIMSVLGVLVGGLLIAMYLPIFQIG
QAI

Nucleotide


Download         Length: 1212 bp        

>NTDB_id=220620 BVC89_RS09640 WP_086930995.1 2274065..2275276(-) (pilC) [Agarilytica rhodophyticola strain 017]
ATGGCAGCCACTTCAGAAGTATTTGTTTATAAAGGCATCGACCGCAAAGGTAATAAGGTCGAAGGTGAAGTTAGCAGCTC
CAGCTCGGCGTTAGCCAAAGCTCAGCTTGTCAAACAAGGTATTCGAACTACAGGTGTAAAGCGTAAGCCTAAACCATTAT
TTGGCGGTGGCGGTAAGGCGATTAAGCCTATGGATATCGCTGTTTTTACCAGACAAATGGCTACCATGATGAAAGCGGGC
GTACCATTGGTGCAGAGCTTTGATATCGTTGCAGATGGCTCTGAAAACCCCAATATGACAAATTTGATCAAAAGTATCAA
AGAAGATGTTGCATCGGGTGGTGGATTTGCCAATTCTCTGCGTAAACAACCTAAGTATTTTGATGAATTATTCTGCAACC
TTGTAGAATCCGGGGAGCAATCTGGTGCACTAGAAACGATGCTTGACCGCATCGCGCTTTACAAAGAGAAAACTGAGCAA
TTAAAAGCTAAAATTAAAAAAGCATTAACTTATCCTATTGCTGTAGTTGTAGTGGCTATTGTAGTTACTGCCATATTATT
AATTAAAGTTGTCCCGCAATTCGCAGAGACATTTTCTTCATTTGGTGCGAACCTACCAGCTTTTACCTTATTTGTTTTAC
ATTTATCAGATCTTGCTCAAGAATATTGGTGGATAGTGCTAATATCACTTACTGGTTTCTTCCTAGCGTTTGGTAAACTG
AAAGAAAAGAGTTTCGCCTTTCGGAGCGCTGTAGATAAAGTAACATTAAAAATCCCTGTTATTGGCGATATTATATACCA
GTCCATATGCGCTCGTTTCGCTAGAACACTCTCAACAACATTTGCTGCTGGTGTCCCCCTAATCGATGCCTTAGAGTCAG
TTGCAGGCTCTACTGGCAATATCCATTATGAAAAATGCACATTAAAAATTAGAGAAGAAGTATCAGCAGGTACACAACTC
AATATAGCCATTGACCACACTAGAATGTTTCCTTCACTTTTAATCCAAATGACGTCAATAGGCGAGGAATCTGGCGCACT
GGATGAAATGCTAGATAAAGTGGCTACCTATTACGAAGAGGCCGTCGACAACCTAGTAGATAGCCTTACTTCCTTACTTG
AGCCTCTCATCATGTCTGTACTGGGTGTTTTAGTTGGGGGGCTATTGATCGCAATGTACCTACCTATCTTCCAAATAGGT
CAAGCGATTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(273-395)

Type II secretion system (T2SS), protein F (T2SSF)

(69-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

62.935

99.752

0.628
  pilC Acinetobacter baumannii D1279779

59.446

98.511

0.586
  pilC Acinetobacter baylyi ADP1

58.04

98.759

0.573
  pilC Legionella pneumophila strain ERS1305867

57.323

98.263

0.563
  pilG Neisseria gonorrhoeae MS11

42.928

100

0.429
  pilG Neisseria meningitidis 44/76-A

42.928

100

0.429
  pilC Vibrio cholerae strain A1552

40.561

97.27

0.395
  pilC Vibrio campbellii strain DS40M4

38.776

97.27

0.377
  pilC Thermus thermophilus HB27

36.139

100

0.362

Multiple sequence alignment