Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   BVC89_RS09620 Genome accession   NZ_CP020038
Coordinates   2271314..2271826 (-) Length   170 a.a.
NCBI ID   WP_086930991.1    Uniprot ID   -
Organism   Agarilytica rhodophyticola strain 017     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2266314..2276826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVC89_RS09595 argJ 2267002..2268225 (+) 1224 WP_086930986.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  BVC89_RS09600 mutT 2268229..2268633 (+) 405 WP_086930987.1 8-oxo-dGTP diphosphatase MutT -
  BVC89_RS09605 - 2268630..2269406 (-) 777 WP_086930988.1 LuxR C-terminal-related transcriptional regulator -
  BVC89_RS09610 - 2269575..2270033 (+) 459 WP_086930989.1 hypothetical protein -
  BVC89_RS09615 - 2270394..2271143 (+) 750 WP_086930990.1 hypothetical protein -
  BVC89_RS09620 pilE 2271314..2271826 (-) 513 WP_086930991.1 pilin Machinery gene
  BVC89_RS09625 - 2272215..2272406 (-) 192 WP_086930992.1 DNA gyrase inhibitor YacG -
  BVC89_RS09630 coaE 2272413..2273021 (-) 609 WP_086930993.1 dephospho-CoA kinase -
  BVC89_RS09635 pilD 2273025..2273918 (-) 894 WP_086930994.1 A24 family peptidase Machinery gene
  BVC89_RS09640 pilC 2274065..2275276 (-) 1212 WP_086930995.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 17311.74 Da        Isoelectric Point: 4.6128

>NTDB_id=220618 BVC89_RS09620 WP_086930991.1 2271314..2271826(-) (pilE) [Agarilytica rhodophyticola strain 017]
MKKVQQGFTLIELMIVVAIIGILAAVALPAYQDYTVRTKVSEGLGLAQSAKVSVSESFAAGDVTAMNAASTDWNANFVAT
KYVQTIAIAANTGVITVTYDVGADALPQLNGANEITLSPFVGNAALASGAAGNIDWACAGATNVTATANGYAPTAPANPV
IARYLPSQCK

Nucleotide


Download         Length: 513 bp        

>NTDB_id=220618 BVC89_RS09620 WP_086930991.1 2271314..2271826(-) (pilE) [Agarilytica rhodophyticola strain 017]
ATGAAGAAAGTACAACAAGGTTTTACTCTTATTGAATTGATGATCGTAGTTGCGATTATCGGTATCTTAGCTGCCGTAGC
TTTACCAGCATACCAAGACTACACTGTGAGAACTAAAGTATCTGAAGGTTTAGGCTTAGCGCAATCAGCAAAAGTATCTG
TAAGTGAATCATTCGCTGCTGGTGATGTAACCGCTATGAACGCTGCTAGCACTGATTGGAATGCTAACTTCGTTGCCACC
AAGTATGTTCAGACAATTGCCATTGCTGCTAACACCGGTGTTATCACTGTCACTTATGATGTAGGCGCCGATGCATTACC
TCAGCTAAACGGTGCTAACGAAATCACACTTTCTCCATTTGTTGGTAACGCTGCGCTAGCTTCTGGTGCAGCTGGTAATA
TCGACTGGGCATGTGCTGGTGCGACCAACGTGACTGCAACTGCAAATGGATATGCACCTACAGCACCTGCTAACCCTGTA
ATAGCTCGTTACTTGCCATCACAATGTAAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-28)

Pilin (bacterial filament) (Pilin)

(36-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Neisseria elongata subsp. glycolytica ATCC 29315

43.617

100

0.482
  pilA Ralstonia pseudosolanacearum GMI1000

44.318

100

0.459
  pilA2 Legionella pneumophila strain ERS1305867

43.373

97.647

0.424
  pilE Neisseria gonorrhoeae strain FA1090

40.113

100

0.418
  pilA2 Legionella pneumophila str. Paris

42.771

97.647

0.418
  comP Acinetobacter baylyi ADP1

39.429

100

0.406
  pilA/pilA1 Eikenella corrodens VA1

37.079

100

0.388
  pilE Neisseria gonorrhoeae MS11

35.028

100

0.365

Multiple sequence alignment