Detailed information NTG0220619

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: BVC89_RS09635
• Genome accession: NZ_CP020038
• Coordinates: 2273025..2273918 (-)
• Length: 297 a.a.
• NCBI ID: WP_086930994.1
• Uniprot ID: -
• Organism: Agarilytica rhodophyticola strain 017
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2268025..2278918

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BVC89_RS09600	mutT	2268229..2268633 (+)	405	WP_086930987.1	8-oxo-dGTP diphosphatase MutT	-
BVC89_RS09605	-	2268630..2269406 (-)	777	WP_086930988.1	LuxR C-terminal-related transcriptional regulator	-
BVC89_RS09610	-	2269575..2270033 (+)	459	WP_086930989.1	hypothetical protein	-
BVC89_RS09615	-	2270394..2271143 (+)	750	WP_086930990.1	hypothetical protein	-
BVC89_RS09620	pilE	2271314..2271826 (-)	513	WP_086930991.1	pilin	Machinery gene
BVC89_RS09625	-	2272215..2272406 (-)	192	WP_086930992.1	DNA gyrase inhibitor YacG	-
BVC89_RS09630	coaE	2272413..2273021 (-)	609	WP_086930993.1	dephospho-CoA kinase	-
BVC89_RS09635	pilD	2273025..2273918 (-)	894	WP_086930994.1	A24 family peptidase	Machinery gene
BVC89_RS09640	pilC	2274065..2275276 (-)	1212	WP_086930995.1	type II secretion system F family protein	Machinery gene
BVC89_RS09645	pilB	2275283..2276992 (-)	1710	WP_086930996.1	type IV-A pilus assembly ATPase PilB	Machinery gene
BVC89_RS09650	-	2277564..2277656 (+)	93	Protein_1872	prepilin-type N-terminal cleavage/methylation domain-containing protein	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 33064.34 Da
• Isoelectric Point: 7.3419

>NTDB_id=220619 BVC89_RS09635 WP_086930994.1 2273025..2273918(-) (pilD) [Agarilytica rhodophyticola strain 017]
MTYLTWINELFVFFSLIIGLLVGSFLNVVAYRLPLSLFSDWHQQARDILIEKGEIKVGQLKDMGEDTTFNIAYPASHCPA
CKTPIKPWHNIPVISYIFLLKGKCHYCGAHISARYPIVEFVTGLLTAFVVSQMGLSVASGFAVILTWSLIALTLIDIDHQ
LLPDDITYPLLWLGIIANLFGTFTSLNDAIIGAISGYLFLWSIYWIFKLITKKEGMGYGDFKLLAALGAWMGWQALPLIV
ILSSLVGAIIGICGILIYGKDKNKPIPFGPYLAIAGWIAFLWGDFILSSYLQMLKLN

Nucleotide

• Length: 894 bp

>NTDB_id=220619 BVC89_RS09635 WP_086930994.1 2273025..2273918(-) (pilD) [Agarilytica rhodophyticola strain 017]
TTGACATACCTCACTTGGATAAATGAGTTATTTGTTTTCTTCAGTTTAATCATAGGACTGTTAGTTGGCAGCTTTCTAAA
CGTTGTAGCATACCGCTTACCCCTAAGTTTATTTAGTGACTGGCACCAACAAGCTCGAGATATACTAATTGAAAAAGGCG
AAATAAAAGTCGGCCAACTTAAAGATATGGGAGAAGATACAACTTTTAATATCGCATATCCCGCGTCTCATTGCCCTGCC
TGCAAAACTCCGATTAAGCCCTGGCACAACATCCCTGTTATTAGCTATATTTTTCTATTAAAAGGTAAATGCCATTATTG
TGGTGCACACATTAGTGCCCGATATCCTATCGTTGAATTCGTTACAGGTTTACTCACTGCTTTTGTCGTCTCACAAATGG
GCTTATCCGTAGCCTCAGGATTTGCTGTAATTTTAACTTGGAGTTTAATAGCGCTAACGTTAATTGATATAGACCATCAG
TTATTACCTGACGACATCACCTACCCTTTATTATGGTTGGGAATAATTGCCAATCTCTTTGGCACATTTACGTCTCTCAA
CGATGCGATTATTGGCGCAATTTCAGGTTATTTATTTCTGTGGAGCATTTACTGGATATTTAAACTCATCACCAAGAAAG
AAGGTATGGGCTATGGAGATTTTAAATTACTGGCAGCTTTGGGCGCCTGGATGGGATGGCAAGCCCTACCATTGATAGTT
ATTTTATCTTCTTTAGTGGGAGCCATTATAGGGATTTGTGGTATCCTTATTTACGGTAAAGATAAAAATAAACCTATTCC
GTTTGGCCCATATTTAGCGATAGCTGGCTGGATTGCCTTCCTTTGGGGAGACTTCATACTCTCTTCTTACTTGCAAATGT
TAAAATTAAATTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-131)

• Type IV leader peptidase family (Peptidase_A24) (144-252)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	52	92.593	0.481
pilD	Vibrio campbellii strain DS40M4	50.355	94.949	0.478
pilD	Acinetobacter nosocomialis M2	51.636	92.593	0.478
pilD	Vibrio cholerae strain A1552	48.227	94.949	0.458
pilD	Neisseria gonorrhoeae MS11	44.056	96.296	0.424