Detailed information
Bioinformatically predicted
Overview
| Name | ssbB | Type | Machinery gene |
| Locus tag | GTHT12_RS16425 | Genome accession | NZ_CP020030 |
| Coordinates | 3256329..3256676 (-) | Length | 115 a.a. |
| NCBI ID | WP_008880386.1 | Uniprot ID | A4IT00 |
| Organism | Geobacillus thermodenitrificans strain T12 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 3251329..3261676
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GTHT12_RS16410 (GTHT12_02669) | - | 3253131..3254765 (-) | 1635 | WP_087960262.1 | peptidoglycan-binding protein | - |
| GTHT12_RS16415 (GTHT12_02670) | - | 3255075..3255575 (-) | 501 | WP_008880384.1 | hypothetical protein | - |
| GTHT12_RS16420 (GTHT12_02671) | - | 3255789..3256199 (+) | 411 | WP_029761384.1 | helix-turn-helix transcriptional regulator | - |
| GTHT12_RS16425 (GTHT12_02672) | ssbB | 3256329..3256676 (-) | 348 | WP_008880386.1 | single-stranded DNA-binding protein | Machinery gene |
| GTHT12_RS16430 (GTHT12_02673) | - | 3256960..3257400 (+) | 441 | WP_008880387.1 | YwpF-like family protein | - |
| GTHT12_RS16435 (GTHT12_02674) | - | 3257587..3258258 (-) | 672 | WP_008880388.1 | class D sortase | - |
| GTHT12_RS16440 (GTHT12_02675) | - | 3258265..3259233 (-) | 969 | WP_081157468.1 | processed acidic surface protein | - |
| GTHT12_RS16445 (GTHT12_02676) | - | 3259343..3260719 (-) | 1377 | WP_011888254.1 | aspartate kinase | - |
| GTHT12_RS16450 (GTHT12_02677) | - | 3260870..3261304 (-) | 435 | WP_008880391.1 | DUF1284 domain-containing protein | - |
Sequence
Protein
Download Length: 115 a.a. Molecular weight: 12957.77 Da Isoelectric Point: 8.5040
>NTDB_id=220547 GTHT12_RS16425 WP_008880386.1 3256329..3256676(-) (ssbB) [Geobacillus thermodenitrificans strain T12]
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV
MINQVVLVGRLTKDPELRYTAEGTAVTTVILAVARNFRNAEGGIDADFVPCVLWRKTAEHTAHYCQKGSMVAVTGRIQTR
RYENKDGQRVYVTEVVADSVQFLHSGKVREWPEHV
Nucleotide
Download Length: 348 bp
>NTDB_id=220547 GTHT12_RS16425 WP_008880386.1 3256329..3256676(-) (ssbB) [Geobacillus thermodenitrificans strain T12]
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG
ATGATCAATCAAGTCGTACTTGTCGGCCGATTGACGAAGGATCCAGAGCTTCGTTACACGGCCGAAGGGACGGCCGTTAC
AACCGTGATCTTGGCGGTAGCAAGAAATTTTCGCAACGCGGAAGGGGGGATTGATGCTGACTTCGTTCCGTGTGTCCTAT
GGCGGAAAACGGCAGAGCATACTGCCCATTATTGCCAAAAAGGATCGATGGTGGCGGTAACGGGTAGAATCCAGACGCGC
CGTTATGAAAACAAAGACGGCCAGCGCGTCTATGTGACGGAAGTCGTAGCCGATTCAGTTCAGTTTCTCCACTCCGGCAA
AGTGCGAGAATGGCCGGAGCACGTCTAG
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
67.273 |
95.652 |
0.643 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
62.5 |
90.435 |
0.565 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.952 |
91.304 |
0.557 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
47.368 |
99.13 |
0.47 |
| ssbA | Streptococcus mutans UA159 |
44.737 |
99.13 |
0.443 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
43.86 |
99.13 |
0.435 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
43.86 |
99.13 |
0.435 |
| ssbB/cilA | Streptococcus mitis SK321 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
42.982 |
99.13 |
0.426 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
42.982 |
99.13 |
0.426 |
| ssbB | Lactococcus lactis subsp. cremoris KW2 |
41.346 |
90.435 |
0.374 |