Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   MS8345_RS11470 Genome accession   NZ_CP025401
Coordinates   2155345..2155821 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain MS8345     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150345..2160821
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MS8345_RS11440 (MS8345_02114) - 2150491..2153007 (+) 2517 WP_001513839.1 hypothetical protein -
  MS8345_RS11445 (MS8345_02115) - 2153083..2153538 (+) 456 WP_000581504.1 IrmA family protein -
  MS8345_RS11450 (MS8345_02116) - 2153617..2153850 (+) 234 WP_001119729.1 DUF905 family protein -
  MS8345_RS11460 (MS8345_02117) - 2153950..2154768 (+) 819 WP_001234629.1 DUF932 domain-containing protein -
  MS8345_RS11465 (MS8345_02118) - 2154850..2155329 (+) 480 WP_000860076.1 antirestriction protein -
  MS8345_RS11470 (MS8345_02119) radC 2155345..2155821 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  MS8345_RS11475 (MS8345_02120) yeeT 2155884..2156105 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  MS8345_RS11480 (MS8345_02121) cbeA 2156179..2156547 (+) 369 WP_001285584.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  MS8345_RS11485 (MS8345_02122) cbtA 2156636..2157010 (+) 375 WP_000854814.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  MS8345_RS11490 (MS8345_02123) yeeW 2157007..2157201 (+) 195 WP_000988600.1 DUF5983 family protein -
  MS8345_RS30050 - 2157247..2157327 (+) 81 Protein_2143 hypothetical protein -
  MS8345_RS11495 - 2157616..2157744 (-) 129 Protein_2144 transposase domain-containing protein -
  MS8345_RS11500 - 2157816..2157998 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  MS8345_RS11505 (MS8345_02124) tmaR 2158099..2158428 (-) 330 WP_000450409.1 DUF496 family protein -
  MS8345_RS11510 (MS8345_02125) yeeA 2158600..2159658 (-) 1059 WP_001200888.1 FUSC family protein -
  MS8345_RS11515 (MS8345_02126) sbmC 2159856..2160329 (-) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=218655 MS8345_RS11470 WP_001186773.1 2155345..2155821(+) (radC) [Escherichia coli strain MS8345]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=218655 MS8345_RS11470 WP_001186773.1 2155345..2155821(+) (radC) [Escherichia coli strain MS8345]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment