Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   BZ167_RS01320 Genome accession   NZ_CP019626
Coordinates   360452..361231 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus sp. 275     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 355452..366231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS01290 (BZ167_01295) fliH 355496..356251 (-) 756 WP_060675466.1 flagellar assembly protein FliH -
  BZ167_RS01295 (BZ167_01300) fliG 356244..357260 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  BZ167_RS01300 (BZ167_01305) fliF 357273..358883 (-) 1611 WP_012117551.1 flagellar basal-body MS-ring/collar protein FliF -
  BZ167_RS01305 (BZ167_01310) fliE 358926..359246 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  BZ167_RS01310 (BZ167_01315) flgC 359257..359709 (-) 453 WP_007409776.1 flagellar basal body rod protein FlgC -
  BZ167_RS01315 (BZ167_01320) flgB 359709..360098 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  BZ167_RS01320 (BZ167_01325) codY 360452..361231 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  BZ167_RS01325 (BZ167_01330) hslU 361269..362672 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  BZ167_RS01330 (BZ167_01335) hslV 362689..363234 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  BZ167_RS01335 (BZ167_01340) xerC 363250..364167 (-) 918 WP_039251511.1 tyrosine recombinase XerC -
  BZ167_RS01340 (BZ167_01345) trmFO 364237..365544 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=217321 BZ167_RS01320 WP_003154263.1 360452..361231(-) (codY) [Bacillus sp. 275]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=217321 BZ167_RS01320 WP_003154263.1 360452..361231(-) (codY) [Bacillus sp. 275]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment