Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   BZ167_RS02230 Genome accession   NZ_CP019626
Coordinates   584790..585074 (-) Length   94 a.a.
NCBI ID   WP_003154557.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 579790..590074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS02210 (BZ167_02215) ade 579896..581629 (-) 1734 WP_033574609.1 adenine deaminase -
  BZ167_RS02215 (BZ167_02220) ktrC 581778..582443 (-) 666 WP_003154554.1 Ktr system potassium transporter KtrC -
  BZ167_RS02220 (BZ167_02225) - 582484..583311 (-) 828 WP_015239773.1 gamma-glutamylcyclotransferase family protein -
  BZ167_RS02225 (BZ167_02230) - 583313..584617 (-) 1305 WP_007409646.1 ATP-binding protein -
  BZ167_RS02230 (BZ167_02235) abrB 584790..585074 (-) 285 WP_003154557.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  BZ167_RS02240 (BZ167_02245) mreBH 585345..586352 (+) 1008 WP_003154558.1 cell shape-determining protein MreBH -
  BZ167_RS20030 - 586424..586558 (+) 135 WP_003154559.1 protein YkpC -
  BZ167_RS02245 (BZ167_02250) - 586659..587891 (+) 1233 WP_007409644.1 aminopeptidase -
  BZ167_RS02250 (BZ167_02255) - 587923..588831 (-) 909 WP_033574611.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 94 a.a.        Molecular weight: 10584.45 Da        Isoelectric Point: 5.2271

>NTDB_id=217323 BZ167_RS02230 WP_003154557.1 584790..585074(-) (abrB) [Bacillus sp. 275]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIVLKKYKPHGICLMTGEITPENQEYGNGKIILSPEGAK
MLLEEIEEALKDRS

Nucleotide


Download         Length: 285 bp        

>NTDB_id=217323 BZ167_RS02230 WP_003154557.1 584790..585074(-) (abrB) [Bacillus sp. 275]
ATGAAATCAATTGGTGTAGTAAGAAAAGTAGACGAACTCGGGCGTATTGTCATGCCGATTGAATTGAGAAGAGCATTGGA
TATCGCTATTAAAGATAGTATTGAATTTTTCGTTGACGGAGACAAAATTGTCTTGAAAAAATACAAGCCGCACGGCATTT
GCTTAATGACGGGGGAAATTACTCCCGAAAATCAGGAGTACGGCAACGGCAAAATTATTTTAAGTCCTGAAGGAGCGAAA
ATGCTGCTTGAGGAAATCGAGGAAGCGTTAAAAGATAGATCATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(54-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

97.872

0.543

Multiple sequence alignment