Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   BZ167_RS01350 Genome accession   NZ_CP019626
Coordinates   367866..368765 (-) Length   299 a.a.
NCBI ID   WP_060675464.1    Uniprot ID   -
Organism   Bacillus sp. 275     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 362866..373765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BZ167_RS01335 (BZ167_01340) xerC 363250..364167 (-) 918 WP_039251511.1 tyrosine recombinase XerC -
  BZ167_RS01340 (BZ167_01345) trmFO 364237..365544 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  BZ167_RS01345 (BZ167_01350) topA 365609..367684 (-) 2076 WP_060675465.1 type I DNA topoisomerase -
  BZ167_RS01350 (BZ167_01355) dprA 367866..368765 (-) 900 WP_060675464.1 DNA-processing protein DprA Machinery gene
  BZ167_RS01355 (BZ167_01360) sucD 368831..369733 (-) 903 WP_003154281.1 succinate--CoA ligase subunit alpha -
  BZ167_RS01360 (BZ167_01365) sucC 369762..370919 (-) 1158 WP_003154283.1 ADP-forming succinate--CoA ligase subunit beta -
  BZ167_RS01365 (BZ167_01370) - 371094..371375 (-) 282 WP_007409769.1 FlhB-like flagellar biosynthesis protein -
  BZ167_RS01370 (BZ167_01375) - 371372..373075 (-) 1704 WP_060675463.1 hypothetical protein -

Sequence

Protein


Download         Length: 299 a.a.        Molecular weight: 32864.07 Da        Isoelectric Point: 8.4593

>NTDB_id=217322 BZ167_RS01350 WP_060675464.1 367866..368765(-) (dprA) [Bacillus sp. 275]
MDQASRCLMVCSINQIISPSLLLKWWKADHSLSFLPDPHPLTVLSEGKTAPEAIFREIERKDPELDEVLSDYRREGITVI
PISSSRYPTWLKAIYDPPAVLYAKGNTLLLEKGRKIGIVGTRKPTEDGIKAVGHLSAELSKKGWVIVSGLASGIDGLSHK
ASIRAKGLTIGVIAGGFHHIYPRKNLLLAEYMAEHHLLLSEHPPETKPKKWHFPMRNRIISGLSEGIVVVQGKEKSGSLI
TAYQALDQGREVFAVPGSIFNPYSGGPIKLIQEGAKAVLCAEDIDGELTARCVQYTEPF

Nucleotide


Download         Length: 900 bp        

>NTDB_id=217322 BZ167_RS01350 WP_060675464.1 367866..368765(-) (dprA) [Bacillus sp. 275]
TTGGATCAAGCATCGCGCTGTTTAATGGTCTGCAGTATTAATCAAATCATTTCCCCGTCTCTTCTATTAAAATGGTGGAA
AGCTGATCATTCTCTGTCTTTTTTACCGGATCCGCATCCATTAACTGTTTTATCAGAAGGGAAAACAGCCCCGGAAGCAA
TTTTTCGGGAAATAGAGCGCAAGGATCCGGAACTTGATGAAGTTCTGTCCGATTACCGCCGAGAAGGCATTACTGTCATT
CCGATTTCATCAAGCCGCTATCCAACATGGCTTAAAGCGATTTATGATCCGCCGGCTGTCTTGTATGCAAAAGGGAACAC
GCTGCTTCTTGAAAAAGGCAGAAAAATCGGGATTGTAGGAACGCGGAAACCGACGGAAGACGGAATAAAAGCGGTTGGGC
ATCTTTCCGCCGAACTCTCAAAAAAAGGCTGGGTCATTGTAAGCGGGCTTGCATCCGGTATAGACGGATTGTCTCATAAG
GCGAGCATCAGGGCAAAAGGGCTTACGATCGGCGTGATAGCCGGCGGATTCCATCACATCTATCCCCGGAAAAATCTCCT
GTTAGCAGAATACATGGCTGAACACCATCTCCTACTCTCAGAACATCCTCCTGAAACAAAGCCGAAAAAATGGCACTTTC
CGATGAGAAACCGCATAATCAGCGGACTAAGTGAAGGAATTGTGGTCGTGCAGGGAAAAGAAAAAAGCGGTTCATTAATC
ACAGCTTACCAGGCTCTCGATCAAGGCAGAGAGGTATTTGCCGTTCCGGGTTCCATATTTAATCCATATTCCGGAGGACC
TATAAAACTCATTCAAGAAGGGGCGAAAGCTGTATTATGCGCAGAGGATATTGACGGAGAGCTGACCGCCCGATGCGTTC
AGTATACGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(73-278)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

70.569

100

0.706
  dprA Lactococcus lactis subsp. cremoris KW2

41.288

88.294

0.365

Multiple sequence alignment