Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   CV098_RS11480 Genome accession   NZ_CP024958
Coordinates   2343989..2344582 (-) Length   197 a.a.
NCBI ID   WP_017865241.1    Uniprot ID   -
Organism   Lactococcus lactis subsp. lactis strain G423     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2338989..2349582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CV098_RS12015 - 2339196..2339360 (-) 165 WP_003131988.1 hypothetical protein -
  CV098_RS11455 (CV098_11455) - 2339465..2340082 (-) 618 WP_017865237.1 AAA family ATPase -
  CV098_RS11460 (CV098_11460) - 2340079..2341263 (-) 1185 WP_017865238.1 ABC transporter permease -
  CV098_RS11465 (CV098_11465) - 2341330..2341614 (-) 285 WP_226898144.1 hypothetical protein -
  CV098_RS11470 (CV098_11470) - 2341840..2342724 (-) 885 WP_017865240.1 Rgg/GadR/MutR family transcriptional regulator -
  CV098_RS11475 (CV098_11475) ruvB 2342861..2343862 (-) 1002 WP_003131994.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  CV098_RS11480 (CV098_11480) ruvA 2343989..2344582 (-) 594 WP_017865241.1 Holliday junction branch migration protein RuvA Machinery gene
  CV098_RS11485 (CV098_11485) hexB 2344695..2346665 (-) 1971 WP_026138979.1 DNA mismatch repair endonuclease MutL Machinery gene
  CV098_RS11490 (CV098_11490) - 2346794..2347489 (-) 696 WP_017865243.1 hypothetical protein -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21180.75 Da        Isoelectric Point: 5.8218

>NTDB_id=215760 CV098_RS11480 WP_017865241.1 2343989..2344582(-) (ruvA) [Lactococcus lactis subsp. lactis strain G423]
MFEYLNGKLVKISPTNIVIDVAGIGYLISVANPYAWSALMNTEVKIYVHQVIREDAHSLYGFVNEAEKALFLRLISVSGI
GPKSALAIIAAADNEGLITAIDNSDIKYLTKFPGVGKKTAMQMVLDLAGKFDATGTVGISLLEAGPAGNLALEEAIEALQ
ALGYKATELKKIEKKLAQETGLTSEEYIKSALKLMMK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=215760 CV098_RS11480 WP_017865241.1 2343989..2344582(-) (ruvA) [Lactococcus lactis subsp. lactis strain G423]
ATGTTTGAATATCTTAATGGAAAATTAGTAAAAATTTCCCCAACAAATATTGTAATTGATGTAGCAGGAATTGGTTATCT
TATCAGTGTAGCTAACCCTTACGCTTGGTCTGCTTTGATGAACACAGAAGTAAAAATTTATGTTCATCAAGTCATTCGCG
AAGATGCCCACAGCCTCTATGGTTTTGTTAACGAGGCCGAAAAAGCTTTATTCTTACGTCTGATCAGCGTTTCTGGGATT
GGGCCAAAATCAGCTCTGGCCATCATTGCGGCGGCTGATAACGAAGGTTTAATCACTGCTATTGACAATAGTGATATCAA
GTATTTAACTAAATTTCCAGGAGTTGGTAAAAAAACGGCCATGCAGATGGTGCTTGATTTGGCTGGGAAATTTGATGCGA
CAGGAACTGTAGGTATTTCTCTTCTTGAGGCTGGACCTGCTGGAAATCTTGCTTTGGAAGAAGCGATTGAAGCGCTACAA
GCTTTGGGTTATAAAGCAACAGAATTGAAGAAAATTGAGAAAAAATTAGCTCAAGAAACAGGTCTGACCAGCGAAGAATA
TATCAAATCAGCCTTAAAACTTATGATGAAATAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-196)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

60.101

100

0.604
  ruvA Streptococcus pneumoniae R6

60.101

100

0.604
  ruvA Streptococcus pneumoniae D39

60.101

100

0.604
  ruvA Bacillus subtilis subsp. subtilis str. 168

44.828

100

0.462

Multiple sequence alignment