Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | PspS49_RS25035 | Genome accession | NZ_CP019432 |
| Coordinates | 5682185..5683057 (+) | Length | 290 a.a. |
| NCBI ID | WP_150774963.1 | Uniprot ID | A0A5E6STA7 |
| Organism | Pseudomonas sp. S49 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5677185..5688057
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PspS49_RS25010 (PspS49_25330) | - | 5677383..5677679 (+) | 297 | WP_160041866.1 | DUF2845 domain-containing protein | - |
| PspS49_RS25015 (PspS49_25335) | - | 5677950..5678306 (-) | 357 | WP_047600285.1 | BON domain-containing protein | - |
| PspS49_RS25020 (PspS49_25340) | pilA | 5678605..5679036 (-) | 432 | WP_034153877.1 | pilin | Machinery gene |
| PspS49_RS25025 (PspS49_25345) | pilB | 5679263..5680963 (+) | 1701 | WP_160041868.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| PspS49_RS25030 (PspS49_25350) | pilC | 5680966..5682183 (+) | 1218 | WP_127929816.1 | type II secretion system F family protein | Machinery gene |
| PspS49_RS25035 (PspS49_25355) | pilD | 5682185..5683057 (+) | 873 | WP_150774963.1 | A24 family peptidase | Machinery gene |
| PspS49_RS25040 (PspS49_25360) | coaE | 5683054..5683677 (+) | 624 | WP_160041870.1 | dephospho-CoA kinase | - |
| PspS49_RS25045 (PspS49_25365) | yacG | 5683674..5683874 (+) | 201 | WP_007909902.1 | DNA gyrase inhibitor YacG | - |
| PspS49_RS25050 (PspS49_25370) | - | 5683881..5684096 (-) | 216 | WP_007909901.1 | hypothetical protein | - |
| PspS49_RS25055 (PspS49_25375) | - | 5684162..5684851 (-) | 690 | WP_150774964.1 | energy-coupling factor ABC transporter permease | - |
| PspS49_RS25060 (PspS49_25380) | - | 5685044..5685670 (+) | 627 | WP_127929820.1 | DUF1780 domain-containing protein | - |
| PspS49_RS25065 (PspS49_25385) | - | 5685667..5686194 (+) | 528 | WP_127929821.1 | MOSC domain-containing protein | - |
| PspS49_RS25070 (PspS49_25390) | - | 5686246..5686419 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| PspS49_RS25075 (PspS49_25395) | - | 5686483..5687781 (+) | 1299 | WP_016986237.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 32360.67 Da Isoelectric Point: 7.4001
>NTDB_id=215761 PspS49_RS25035 WP_150774963.1 5682185..5683057(+) (pilD) [Pseudomonas sp. S49]
MPIDELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLWLRGRCSACAAPISKRYPLTELACGLLSAFIAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVVLLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
MPIDELFALYPLAFVFTALLLGLVVGSFLNVLIWRLPKMLERDWRQQAHDVLGLPGETPLPTYNLMLPHSECPHCAHRIR
AWENIPLLSYLWLRGRCSACAAPISKRYPLTELACGLLSAFIAWHFGFGWPACLLIVLTWGLLAMSLIDTEHQLLPDVLV
LPLLWLGLIVNSFGVFVPLHDALWGAVAGYMALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AIIGVVLLRLREQKTSTPIPFGPYLAIAGWIALLWGGQITDFYWQFVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=215761 PspS49_RS25035 WP_150774963.1 5682185..5683057(+) (pilD) [Pseudomonas sp. S49]
ATGCCTATCGACGAACTGTTCGCCCTGTATCCGCTGGCCTTTGTCTTTACCGCCCTGCTGCTCGGTCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGATTGGCGTCAGCAAGCCCACGACGTGCTCGGTT
TGCCCGGCGAAACGCCGCTGCCCACCTACAACCTGATGCTGCCGCACTCTGAATGCCCGCACTGCGCCCACCGGATCCGC
GCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGGGGGCGCTGTTCGGCGTGCGCTGCACCTATCAGCAAACG
CTATCCGCTGACCGAACTGGCCTGCGGGCTGCTCTCGGCATTCATTGCCTGGCACTTCGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTTTGCTGGCGATGAGTCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCGTCTTCGTACCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGATGGCATCGGCCACGGTGATT
TCAAGCTGTTGGCGCTGCTCGGTGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGGTTTTGCTACGCCTGCGCGAACAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
ATGCCTATCGACGAACTGTTCGCCCTGTATCCGCTGGCCTTTGTCTTTACCGCCCTGCTGCTCGGTCTGGTGGTCGGCAG
CTTCCTCAATGTGCTGATCTGGCGCCTGCCGAAAATGCTCGAACGCGATTGGCGTCAGCAAGCCCACGACGTGCTCGGTT
TGCCCGGCGAAACGCCGCTGCCCACCTACAACCTGATGCTGCCGCACTCTGAATGCCCGCACTGCGCCCACCGGATCCGC
GCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGGCTGCGGGGGCGCTGTTCGGCGTGCGCTGCACCTATCAGCAAACG
CTATCCGCTGACCGAACTGGCCTGCGGGCTGCTCTCGGCATTCATTGCCTGGCACTTCGGTTTCGGCTGGCCGGCGTGCC
TGCTGATCGTCCTCACCTGGGGTTTGCTGGCGATGAGTCTGATCGACACCGAACATCAACTGCTGCCCGATGTGCTGGTG
CTGCCGTTGCTGTGGCTGGGGTTGATCGTCAACAGTTTCGGCGTCTTCGTACCGTTGCACGATGCACTGTGGGGCGCGGT
GGCCGGTTATATGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGCTGACCGGCAAGGATGGCATCGGCCACGGTGATT
TCAAGCTGTTGGCGCTGCTCGGTGCCTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTGTTGTCATCACTGGTCGGC
GCCATTATCGGGGTGGTTTTGCTACGCCTGCGCGAACAGAAAACCTCGACGCCGATCCCCTTCGGCCCCTATCTGGCCAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTTTGTCGGTTTGAAATGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
54.965 |
97.241 |
0.534 |
| pilD | Vibrio campbellii strain DS40M4 |
52.482 |
97.241 |
0.51 |
| pilD | Acinetobacter baumannii D1279779 |
48.239 |
97.931 |
0.472 |
| pilD | Acinetobacter nosocomialis M2 |
48.239 |
97.931 |
0.472 |
| pilD | Neisseria gonorrhoeae MS11 |
48.148 |
93.103 |
0.448 |