Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | FORC54_RS13590 | Genome accession | NZ_CP019121 |
| Coordinates | 2696040..2696465 (+) | Length | 141 a.a. |
| NCBI ID | WP_038964707.1 | Uniprot ID | - |
| Organism | Vibrio vulnificus strain FORC_054 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2691040..2701465
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| FORC54_RS13575 (FORC54_2462) | pdhR | 2693109..2693876 (-) | 768 | WP_011079554.1 | pyruvate dehydrogenase complex transcriptional repressor PdhR | - |
| FORC54_RS13580 (FORC54_2464) | ampD | 2694265..2694837 (-) | 573 | WP_080526792.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
| FORC54_RS13585 (FORC54_2465) | nadC | 2694930..2695817 (+) | 888 | WP_080526793.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| FORC54_RS13590 (FORC54_2466) | pilA | 2696040..2696465 (+) | 426 | WP_038964707.1 | pilin | Machinery gene |
| FORC54_RS13595 (FORC54_2467) | pilB | 2696470..2698158 (+) | 1689 | WP_101958937.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| FORC54_RS13600 (FORC54_2468) | pilC | 2698206..2699432 (+) | 1227 | WP_101958938.1 | type II secretion system F family protein | Machinery gene |
| FORC54_RS13605 (FORC54_2469) | pilD | 2699525..2700394 (+) | 870 | WP_101958939.1 | prepilin peptidase | Machinery gene |
| FORC54_RS13610 (FORC54_2470) | coaE | 2700396..2701004 (+) | 609 | WP_045593985.1 | dephospho-CoA kinase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 14727.93 Da Isoelectric Point: 9.4543
>NTDB_id=213333 FORC54_RS13590 WP_038964707.1 2696040..2696465(+) (pilA) [Vibrio vulnificus strain FORC_054]
MKKLHKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
MKKLHKTKKQQGFTLIELMIVVAVIGVLAAIAVPQYQKYVAKSEAATALASITGHRTNVETYVLENGSFPSTSGALAIPT
SPIGVITYENPTSAAGDIKFSFNSSGVSPDIVSKHVTLSRTSAGGWSCATDVATDLKPKGC
Nucleotide
Download Length: 426 bp
>NTDB_id=213333 FORC54_RS13590 WP_038964707.1 2696040..2696465(+) (pilA) [Vibrio vulnificus strain FORC_054]
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATCGTAGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGCGATATTAAATTTAGTTTCAACTCATCAGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACGTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCGA
CAGATCTAAAACCTAAAGGCTGTTAA
ATGAAGAAATTACACAAAACCAAGAAACAACAAGGTTTTACCTTGATTGAATTAATGATCGTAGTGGCGGTAATTGGCGT
GCTCGCAGCAATTGCAGTACCCCAGTATCAAAAATACGTTGCTAAAAGTGAAGCCGCAACCGCTCTAGCTTCGATAACAG
GTCACCGAACTAACGTTGAAACATATGTACTAGAAAATGGTTCTTTCCCATCAACTTCAGGCGCTCTAGCAATACCTACT
TCTCCTATCGGAGTTATTACATACGAAAACCCTACTAGTGCAGCTGGCGATATTAAATTTAGTTTCAACTCATCAGGGGT
TAGCCCAGACATCGTATCGAAACACGTGACACTTTCAAGAACGTCTGCTGGTGGTTGGTCATGTGCAACTGATGTGGCGA
CAGATCTAAAACCTAAAGGCTGTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Vibrio cholerae strain A1552 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae C6706 |
46.358 |
100 |
0.496 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
46.358 |
100 |
0.496 |
| pilA | Pseudomonas aeruginosa PAK |
43.537 |
100 |
0.454 |
| pilA | Acinetobacter baumannii strain A118 |
43.704 |
95.745 |
0.418 |
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
42.143 |
99.291 |
0.418 |
| pilA | Vibrio parahaemolyticus RIMD 2210633 |
42.537 |
95.035 |
0.404 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.416 |
97.163 |
0.383 |