Detailed information NTG0213336

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: FORC54_RS13605
• Genome accession: NZ_CP019121
• Coordinates: 2699525..2700394 (+)
• Length: 289 a.a.
• NCBI ID: WP_101958939.1
• Uniprot ID: -
• Organism: Vibrio vulnificus strain FORC_054
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2694525..2705394

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC54_RS13585 (FORC54_2465)	nadC	2694930..2695817 (+)	888	WP_080526793.1	carboxylating nicotinate-nucleotide diphosphorylase	-
FORC54_RS13590 (FORC54_2466)	pilA	2696040..2696465 (+)	426	WP_038964707.1	pilin	Machinery gene
FORC54_RS13595 (FORC54_2467)	pilB	2696470..2698158 (+)	1689	WP_101958937.1	type IV-A pilus assembly ATPase PilB	Machinery gene
FORC54_RS13600 (FORC54_2468)	pilC	2698206..2699432 (+)	1227	WP_101958938.1	type II secretion system F family protein	Machinery gene
FORC54_RS13605 (FORC54_2469)	pilD	2699525..2700394 (+)	870	WP_101958939.1	prepilin peptidase	Machinery gene
FORC54_RS13610 (FORC54_2470)	coaE	2700396..2701004 (+)	609	WP_045593985.1	dephospho-CoA kinase	-
FORC54_RS13615 (FORC54_2471)	zapD	2701037..2701777 (+)	741	WP_017421189.1	cell division protein ZapD	-
FORC54_RS13620	yacG	2701840..2702034 (+)	195	WP_038941426.1	DNA gyrase inhibitor YacG	-
FORC54_RS13625 (FORC54_2472)	rplS	2702258..2702611 (-)	354	WP_011079544.1	50S ribosomal protein L19	-
FORC54_RS13630 (FORC54_2473)	trmD	2702653..2703402 (-)	750	WP_011079543.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
FORC54_RS13635 (FORC54_2474)	rimM	2703430..2703978 (-)	549	WP_101958940.1	ribosome maturation factor RimM	-
FORC54_RS13640 (FORC54_2475)	rpsP	2703994..2704242 (-)	249	WP_011079541.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32273.38 Da
• Isoelectric Point: 6.8198

>NTDB_id=213336 FORC54_RS13605 WP_101958939.1 2699525..2700394(+) (pilD) [Vibrio vulnificus strain FORC_054]
MDALQYYPWLYIALASLFGLLIGSFLNVVIYRLPKIMELEWRQECAESFPEYKISPPTETLTLSTPRSSCPSCHTPIRVR
DNIPVFSWLALRGKCHHCQTKISARYPFVEALSAFLCGLIAWKFGYAPITVALIGFTLVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALLEISPVSLQDSVIGAMAGYLCLWSVYHLFRLLTGKEGMGYGDFKLLAALGAWLGWQYLPMIILLSSVVGL
IFGLIQLRLQKQGIEMAFPFGPYLAIAGWVALMWGDSLMSWYLNYLIGA

Nucleotide

• Length: 870 bp

>NTDB_id=213336 FORC54_RS13605 WP_101958939.1 2699525..2700394(+) (pilD) [Vibrio vulnificus strain FORC_054]
ATGGACGCGTTACAGTACTACCCTTGGCTTTATATTGCTTTAGCTTCCCTGTTTGGCTTACTGATAGGCAGCTTTCTTAA
CGTCGTCATCTACCGTCTACCAAAAATAATGGAACTGGAGTGGCGCCAAGAGTGTGCAGAGTCCTTTCCTGAATACAAAA
TATCACCGCCGACAGAAACCCTAACATTAAGCACGCCGCGTTCAAGTTGTCCTTCGTGCCATACCCCAATACGAGTTCGA
GATAATATTCCTGTCTTTAGTTGGCTAGCTCTAAGAGGAAAATGTCACCATTGCCAGACGAAAATCAGTGCTCGCTATCC
TTTTGTTGAAGCACTGAGCGCCTTTTTGTGCGGCCTAATCGCTTGGAAGTTCGGTTATGCACCGATTACCGTAGCACTGA
TTGGGTTTACTTTGGTGTTGATCGCCGCCACCTTCATCGACTTAGATACCATGCTACTGCCTGATCAGCTGACACTGCCG
CTGACGTGGGCAGGCATTGCGCTAGCGTTACTTGAGATAAGCCCAGTATCTCTGCAAGATTCAGTGATCGGTGCGATGGC
GGGCTATCTCTGCCTTTGGAGCGTTTATCACCTTTTCCGCTTGCTGACAGGAAAAGAAGGCATGGGTTACGGAGACTTTA
AATTGCTTGCGGCACTTGGAGCTTGGCTTGGTTGGCAATATCTACCGATGATCATCTTACTCTCTTCGGTTGTCGGGTTG
ATCTTTGGTCTCATTCAACTCAGATTGCAAAAACAAGGCATTGAGATGGCTTTTCCATTTGGGCCTTATCTGGCCATTGC
TGGTTGGGTCGCCTTGATGTGGGGAGATAGCTTGATGTCTTGGTATCTCAACTATCTTATAGGGGCATGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (137-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	77.509	100	0.775
pilD	Vibrio cholerae strain A1552	71.528	99.654	0.713
pilD	Acinetobacter nosocomialis M2	54.71	95.502	0.522
pilD	Acinetobacter baumannii D1279779	54.71	95.502	0.522
pilD	Neisseria gonorrhoeae MS11	46.931	95.848	0.45